miRNA display CGI


Results 21 - 40 of 269 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31028 5' -64.9 NC_006560.1 + 99225 0.66 0.522618
Target:  5'- cGGCGGGCUG-C-GGC-CCGGaaacgaggggGGCGu -3'
miRNA:   3'- -CCGCCCGGCuGaCCGuGGCCga--------CCGC- -5'
31028 5' -64.9 NC_006560.1 + 55601 0.66 0.517089
Target:  5'- uGGUcGGCCG-CggcagcaccgucggGGCACCGG-UGGCGu -3'
miRNA:   3'- -CCGcCCGGCuGa-------------CCGUGGCCgACCGC- -5'
31028 5' -64.9 NC_006560.1 + 52518 0.66 0.513417
Target:  5'- cGGCGGaGUCc-CUGGCGgaGGCgggGGCGu -3'
miRNA:   3'- -CCGCC-CGGcuGACCGUggCCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 110145 0.66 0.513417
Target:  5'- -aCGGGCCGGCUGuaCGCCccGCUGuGCGu -3'
miRNA:   3'- ccGCCCGGCUGACc-GUGGc-CGAC-CGC- -5'
31028 5' -64.9 NC_006560.1 + 8900 0.66 0.513417
Target:  5'- cGCGGGCCacGCgUGGUcugucuuCCGGCgcggGGCGc -3'
miRNA:   3'- cCGCCCGGc-UG-ACCGu------GGCCGa---CCGC- -5'
31028 5' -64.9 NC_006560.1 + 80162 0.66 0.513417
Target:  5'- gGGCGGGUCGA--GGUcccCCGGCgGGUc -3'
miRNA:   3'- -CCGCCCGGCUgaCCGu--GGCCGaCCGc -5'
31028 5' -64.9 NC_006560.1 + 134888 0.66 0.513417
Target:  5'- cGCgGGGCCGGCgcauCACCGGCacgaGGCc -3'
miRNA:   3'- cCG-CCCGGCUGacc-GUGGCCGa---CCGc -5'
31028 5' -64.9 NC_006560.1 + 43419 0.66 0.513417
Target:  5'- cGCGGcGCCGGg-GGCGUCGGCgcgcGGCa -3'
miRNA:   3'- cCGCC-CGGCUgaCCGUGGCCGa---CCGc -5'
31028 5' -64.9 NC_006560.1 + 43853 0.66 0.513417
Target:  5'- uGCGGG-CGAC-GuGCGCCGGCgccaGCGg -3'
miRNA:   3'- cCGCCCgGCUGaC-CGUGGCCGac--CGC- -5'
31028 5' -64.9 NC_006560.1 + 67986 0.66 0.513417
Target:  5'- cGgGGGCCG-C-GGCGCCGuCgGGCGa -3'
miRNA:   3'- cCgCCCGGCuGaCCGUGGCcGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 94316 0.66 0.513417
Target:  5'- cGGCcaaccaGGGCgCGACcGuCGCCcggcGGCUGGCGg -3'
miRNA:   3'- -CCG------CCCG-GCUGaCcGUGG----CCGACCGC- -5'
31028 5' -64.9 NC_006560.1 + 116531 0.66 0.5125
Target:  5'- aGGCGGGCgGcgaUGGCGaCGGCcgaguccUGGCu -3'
miRNA:   3'- -CCGCCCGgCug-ACCGUgGCCG-------ACCGc -5'
31028 5' -64.9 NC_006560.1 + 148960 0.66 0.5125
Target:  5'- gGGCGGGaCGcGgUGGCgcgaccaACCGGC-GGCGc -3'
miRNA:   3'- -CCGCCCgGC-UgACCG-------UGGCCGaCCGC- -5'
31028 5' -64.9 NC_006560.1 + 51485 0.66 0.5125
Target:  5'- cGGCGGccccgagGCCGA--GGC-CCGGCccGGCGc -3'
miRNA:   3'- -CCGCC-------CGGCUgaCCGuGGCCGa-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 33822 0.66 0.504283
Target:  5'- gGGCggGGGUCGGCgGGggUCGGCcgcgGGCGu -3'
miRNA:   3'- -CCG--CCCGGCUGaCCguGGCCGa---CCGC- -5'
31028 5' -64.9 NC_006560.1 + 54907 0.66 0.504283
Target:  5'- gGGCGGuaGCCGA--GGCGCUcgggGGCcggGGCGg -3'
miRNA:   3'- -CCGCC--CGGCUgaCCGUGG----CCGa--CCGC- -5'
31028 5' -64.9 NC_006560.1 + 81461 0.66 0.504283
Target:  5'- gGGCGcGGCCGGgaGagcgggggggaGCGCCGGCcccGCGg -3'
miRNA:   3'- -CCGC-CCGGCUgaC-----------CGUGGCCGac-CGC- -5'
31028 5' -64.9 NC_006560.1 + 100810 0.66 0.504283
Target:  5'- cGGCGGgggccauagcGCgGGCgcgGGgGCCGGCggaggggaggGGCGg -3'
miRNA:   3'- -CCGCC----------CGgCUGa--CCgUGGCCGa---------CCGC- -5'
31028 5' -64.9 NC_006560.1 + 117969 0.66 0.504283
Target:  5'- -cCGGuaCGugUGGCGCCugGGCgcGGCGg -3'
miRNA:   3'- ccGCCcgGCugACCGUGG--CCGa-CCGC- -5'
31028 5' -64.9 NC_006560.1 + 75797 0.66 0.504283
Target:  5'- uGGCggagGGGCUG-CUGGCccucucgcagGCCGGg-GGCGg -3'
miRNA:   3'- -CCG----CCCGGCuGACCG----------UGGCCgaCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.