miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31029 3' -59.2 NC_006560.1 + 78039 0.66 0.756269
Target:  5'- -gGCGCCguggcgCGcGGCCccGGAGCUGg -3'
miRNA:   3'- agCGCGGaguauaGC-CCGG--CCUCGAC- -5'
31029 3' -59.2 NC_006560.1 + 124820 0.66 0.756269
Target:  5'- aCGCGCC-CGUcgCGGGCgugcacgcgugCGGGGUc- -3'
miRNA:   3'- aGCGCGGaGUAuaGCCCG-----------GCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 14541 0.66 0.756269
Target:  5'- cCGCGCCUCccuccCGGGagGGGGCg- -3'
miRNA:   3'- aGCGCGGAGuaua-GCCCggCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 138980 0.66 0.756269
Target:  5'- gUCGCGCacccgCGUcgcGUCGGGCCGcuGGCa- -3'
miRNA:   3'- -AGCGCGga---GUA---UAGCCCGGCc-UCGac -5'
31029 3' -59.2 NC_006560.1 + 147977 0.66 0.756269
Target:  5'- -gGCGUC-CGUGUCGGcGUCGGAgGCg- -3'
miRNA:   3'- agCGCGGaGUAUAGCC-CGGCCU-CGac -5'
31029 3' -59.2 NC_006560.1 + 128828 0.66 0.746824
Target:  5'- gCGCGCCgacgCGgc-CGcGGCgCGGAGCUc -3'
miRNA:   3'- aGCGCGGa---GUauaGC-CCG-GCCUCGAc -5'
31029 3' -59.2 NC_006560.1 + 114229 0.66 0.746824
Target:  5'- cUGCGCC-CAggugcccCGGGCCGcGGGCa- -3'
miRNA:   3'- aGCGCGGaGUaua----GCCCGGC-CUCGac -5'
31029 3' -59.2 NC_006560.1 + 78436 0.66 0.743971
Target:  5'- cUGCGCagcgacccggccuuCUCGga--GGGCuCGGAGCUGg -3'
miRNA:   3'- aGCGCG--------------GAGUauagCCCG-GCCUCGAC- -5'
31029 3' -59.2 NC_006560.1 + 4539 0.67 0.737282
Target:  5'- aCGCGCCcCGg---GGGCgGGGGCUc -3'
miRNA:   3'- aGCGCGGaGUauagCCCGgCCUCGAc -5'
31029 3' -59.2 NC_006560.1 + 25900 0.67 0.734402
Target:  5'- gCGCGCCUCcgAUgGGGCgcgcgcacgggccgCGGAgGCg- -3'
miRNA:   3'- aGCGCGGAGuaUAgCCCG--------------GCCU-CGac -5'
31029 3' -59.2 NC_006560.1 + 143192 0.67 0.727652
Target:  5'- gCGCGCCcCGUGcCGGccuCCGGAGCc- -3'
miRNA:   3'- aGCGCGGaGUAUaGCCc--GGCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 69436 0.67 0.727652
Target:  5'- gCGCGgCUCug--CGaGGCCgcGGGGCUGg -3'
miRNA:   3'- aGCGCgGAGuauaGC-CCGG--CCUCGAC- -5'
31029 3' -59.2 NC_006560.1 + 21022 0.67 0.717942
Target:  5'- cCGCcCCgaagggCGGGCCGGGGCg- -3'
miRNA:   3'- aGCGcGGaguauaGCCCGGCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 95559 0.67 0.717942
Target:  5'- cUCGCGCgguucaUCAUGg-GGGCCgGGGGCg- -3'
miRNA:   3'- -AGCGCGg-----AGUAUagCCCGG-CCUCGac -5'
31029 3' -59.2 NC_006560.1 + 104414 0.67 0.717942
Target:  5'- -gGCGgCUCGUggCGGGCCGacuggcaccGGCUGg -3'
miRNA:   3'- agCGCgGAGUAuaGCCCGGCc--------UCGAC- -5'
31029 3' -59.2 NC_006560.1 + 100000 0.67 0.715992
Target:  5'- gUCGCGCCcgggaagcgcccuUUAUacccgcgGUCGGGCCGcGGCUc -3'
miRNA:   3'- -AGCGCGG-------------AGUA-------UAGCCCGGCcUCGAc -5'
31029 3' -59.2 NC_006560.1 + 67738 0.67 0.708162
Target:  5'- cCGCGCCUCcccccgaGGagaGCCGGAGCc- -3'
miRNA:   3'- aGCGCGGAGuauag--CC---CGGCCUCGac -5'
31029 3' -59.2 NC_006560.1 + 146516 0.67 0.708162
Target:  5'- cUGCGCCggg---CGGGCCGGcGCg- -3'
miRNA:   3'- aGCGCGGaguauaGCCCGGCCuCGac -5'
31029 3' -59.2 NC_006560.1 + 99266 0.67 0.69832
Target:  5'- gUCGCGUacggcugCGgg-UGGGCCGGcGGCUGg -3'
miRNA:   3'- -AGCGCGga-----GUauaGCCCGGCC-UCGAC- -5'
31029 3' -59.2 NC_006560.1 + 67771 0.67 0.69832
Target:  5'- cCGCGCCUCccccgaaagaAUcUCGGGCCGccGCg- -3'
miRNA:   3'- aGCGCGGAG----------UAuAGCCCGGCcuCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.