miRNA display CGI


Results 21 - 40 of 245 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31029 5' -59.1 NC_006560.1 + 54050 0.66 0.779689
Target:  5'- cUACGGcuggggcgacucGCCCCucuucuCCCCGCCccCGGCCg -3'
miRNA:   3'- -GUGUC------------UGGGGu-----GGGGUGGuaGCUGGa -5'
31029 5' -59.1 NC_006560.1 + 59882 0.66 0.779689
Target:  5'- cCGCGGGCUgcuUCACCCCgauaGCgGUgGACCUg -3'
miRNA:   3'- -GUGUCUGG---GGUGGGG----UGgUAgCUGGA- -5'
31029 5' -59.1 NC_006560.1 + 119784 0.66 0.779689
Target:  5'- gGCGGugcCCCCGCCCgACCccCGGCg- -3'
miRNA:   3'- gUGUCu--GGGGUGGGgUGGuaGCUGga -5'
31029 5' -59.1 NC_006560.1 + 404 0.66 0.776047
Target:  5'- cCGCccccCCCCGCCCCGCCugugggguucccCGGCCUc -3'
miRNA:   3'- -GUGucu-GGGGUGGGGUGGua----------GCUGGA- -5'
31029 5' -59.1 NC_006560.1 + 79761 0.66 0.774219
Target:  5'- aCACccACCCCcgccGCCCCACCgaagcccccucucgaGUCGACUc -3'
miRNA:   3'- -GUGucUGGGG----UGGGGUGG---------------UAGCUGGa -5'
31029 5' -59.1 NC_006560.1 + 18522 0.66 0.770548
Target:  5'- uGCGG-CCCgCGCCCgCGCCcgCG-CCUg -3'
miRNA:   3'- gUGUCuGGG-GUGGG-GUGGuaGCuGGA- -5'
31029 5' -59.1 NC_006560.1 + 60443 0.66 0.770548
Target:  5'- aCACGGACCuCCuCCUCAUgggcugcgaCAUCGugCUg -3'
miRNA:   3'- -GUGUCUGG-GGuGGGGUG---------GUAGCugGA- -5'
31029 5' -59.1 NC_006560.1 + 83371 0.66 0.770548
Target:  5'- --gGGGCCCCAgCCCucccugGCCA-CGGCCc -3'
miRNA:   3'- gugUCUGGGGUgGGG------UGGUaGCUGGa -5'
31029 5' -59.1 NC_006560.1 + 128988 0.66 0.770548
Target:  5'- gACGGcGCCCCGuCCCCGCg--CGACUUc -3'
miRNA:   3'- gUGUC-UGGGGU-GGGGUGguaGCUGGA- -5'
31029 5' -59.1 NC_006560.1 + 57107 0.66 0.770548
Target:  5'- cCGCGuGGCCCaggacaaaCACCCCcaACCA-CGACCg -3'
miRNA:   3'- -GUGU-CUGGG--------GUGGGG--UGGUaGCUGGa -5'
31029 5' -59.1 NC_006560.1 + 143496 0.66 0.770548
Target:  5'- gGCGucCCCCGCCCCcguCCcccCGACCa -3'
miRNA:   3'- gUGUcuGGGGUGGGGu--GGua-GCUGGa -5'
31029 5' -59.1 NC_006560.1 + 150056 0.66 0.770548
Target:  5'- cCGCGGcgGCCgCGCCCCGCgccCGGCCg -3'
miRNA:   3'- -GUGUC--UGGgGUGGGGUGguaGCUGGa -5'
31029 5' -59.1 NC_006560.1 + 149567 0.66 0.769627
Target:  5'- cCACGGACCCCGggaCCACCGacUCaccccagGACCg -3'
miRNA:   3'- -GUGUCUGGGGUgg-GGUGGU--AG-------CUGGa -5'
31029 5' -59.1 NC_006560.1 + 13383 0.66 0.761287
Target:  5'- -cCGGGCCgCCucggggGCCCCGCgCA-CGACCUg -3'
miRNA:   3'- guGUCUGG-GG------UGGGGUG-GUaGCUGGA- -5'
31029 5' -59.1 NC_006560.1 + 31204 0.66 0.761287
Target:  5'- gCGCAGcuCCCCccggcACCuCCGCUcgCGGCCg -3'
miRNA:   3'- -GUGUCu-GGGG-----UGG-GGUGGuaGCUGGa -5'
31029 5' -59.1 NC_006560.1 + 75676 0.66 0.761287
Target:  5'- gCGCuGcCCCCGCUcgCCGCCGUCcACCg -3'
miRNA:   3'- -GUGuCuGGGGUGG--GGUGGUAGcUGGa -5'
31029 5' -59.1 NC_006560.1 + 80937 0.66 0.761287
Target:  5'- -cCGGGCgCCuCCCCGCCGaacaUCGGCUg -3'
miRNA:   3'- guGUCUGgGGuGGGGUGGU----AGCUGGa -5'
31029 5' -59.1 NC_006560.1 + 55265 0.66 0.761287
Target:  5'- cCGCGGACCCCGCggcgacgccggCCCACUcgagcgcggugGUC-ACCUg -3'
miRNA:   3'- -GUGUCUGGGGUG-----------GGGUGG-----------UAGcUGGA- -5'
31029 5' -59.1 NC_006560.1 + 57605 0.66 0.761287
Target:  5'- cCGCGGccACCCaCGCCgcgacggccgcgCCGCCcgCGACCg -3'
miRNA:   3'- -GUGUC--UGGG-GUGG------------GGUGGuaGCUGGa -5'
31029 5' -59.1 NC_006560.1 + 6338 0.66 0.761287
Target:  5'- gCGCGGgcGCCCCGCCCCgGCC--CGcCCUu -3'
miRNA:   3'- -GUGUC--UGGGGUGGGG-UGGuaGCuGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.