miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3103 5' -50.3 NC_001493.1 + 54928 0.66 0.991713
Target:  5'- uGAGCCGACC---AGCCCGGAgcUCGc -3'
miRNA:   3'- -UUUGGUUGGcuaUUGGGCCUacAGUu -5'
3103 5' -50.3 NC_001493.1 + 48243 0.66 0.990465
Target:  5'- -uACCGAcCCGAUAggGCCaGGAUGUUg- -3'
miRNA:   3'- uuUGGUU-GGCUAU--UGGgCCUACAGuu -5'
3103 5' -50.3 NC_001493.1 + 62481 0.66 0.990465
Target:  5'- aGAACCcACUGAUAGCCCccguGGAccgacccgGUCAAu -3'
miRNA:   3'- -UUUGGuUGGCUAUUGGG----CCUa-------CAGUU- -5'
3103 5' -50.3 NC_001493.1 + 118800 0.66 0.989075
Target:  5'- -cACCGGCCGugacgAGCCCGaGGUggaGUCAGa -3'
miRNA:   3'- uuUGGUUGGCua---UUGGGC-CUA---CAGUU- -5'
3103 5' -50.3 NC_001493.1 + 3246 0.66 0.989075
Target:  5'- -cACCGGCCGugacgAGCCCGaGGUggaGUCAGa -3'
miRNA:   3'- uuUGGUUGGCua---UUGGGC-CUA---CAGUU- -5'
3103 5' -50.3 NC_001493.1 + 71536 0.66 0.989075
Target:  5'- aAGACC-GCCGugaucgcGACCCGGAUGguaUCAGc -3'
miRNA:   3'- -UUUGGuUGGCua-----UUGGGCCUAC---AGUU- -5'
3103 5' -50.3 NC_001493.1 + 121072 0.66 0.983943
Target:  5'- cGAGCCGcggACCGGUGACCagGGAgaguuuccgGUCAc -3'
miRNA:   3'- -UUUGGU---UGGCUAUUGGg-CCUa--------CAGUu -5'
3103 5' -50.3 NC_001493.1 + 58365 0.66 0.983943
Target:  5'- --cCCGACCGugaGACUCGGGgugGUCAu -3'
miRNA:   3'- uuuGGUUGGCua-UUGGGCCUa--CAGUu -5'
3103 5' -50.3 NC_001493.1 + 118392 0.67 0.979623
Target:  5'- ---gCGACCGAUGACCCcGG-GUCGAu -3'
miRNA:   3'- uuugGUUGGCUAUUGGGcCUaCAGUU- -5'
3103 5' -50.3 NC_001493.1 + 2838 0.67 0.979623
Target:  5'- ---gCGACCGAUGACCCcGG-GUCGAu -3'
miRNA:   3'- uuugGUUGGCUAUUGGGcCUaCAGUU- -5'
3103 5' -50.3 NC_001493.1 + 78888 0.67 0.975587
Target:  5'- uGAACCGACCGccgucagcauucgggGUAugCCGGccucgGUCAGa -3'
miRNA:   3'- -UUUGGUUGGC---------------UAUugGGCCua---CAGUU- -5'
3103 5' -50.3 NC_001493.1 + 126410 0.67 0.971602
Target:  5'- uGACCGcgGCCGGUucgcgauccggGACucuCCGGGUGUCGAa -3'
miRNA:   3'- uUUGGU--UGGCUA-----------UUG---GGCCUACAGUU- -5'
3103 5' -50.3 NC_001493.1 + 58799 0.67 0.971602
Target:  5'- cGACCGACCGGUAucgaCCGGcguggauUGUCGc -3'
miRNA:   3'- uUUGGUUGGCUAUug--GGCCu------ACAGUu -5'
3103 5' -50.3 NC_001493.1 + 93846 0.67 0.971602
Target:  5'- uAGAUCGACCGugaacgGACCCGGggGUa-- -3'
miRNA:   3'- -UUUGGUUGGCua----UUGGGCCuaCAguu -5'
3103 5' -50.3 NC_001493.1 + 10856 0.67 0.971602
Target:  5'- uGACCGcgGCCGGUucgcgauccggGACucuCCGGGUGUCGAa -3'
miRNA:   3'- uUUGGU--UGGCUA-----------UUG---GGCCUACAGUU- -5'
3103 5' -50.3 NC_001493.1 + 18838 0.68 0.965127
Target:  5'- --cCCGACCGGUGugcguUCCGGGUGUgGu -3'
miRNA:   3'- uuuGGUUGGCUAUu----GGGCCUACAgUu -5'
3103 5' -50.3 NC_001493.1 + 8569 0.68 0.965127
Target:  5'- cAGCCGcaGCCGAaGGUCCGGGUGUCc- -3'
miRNA:   3'- uUUGGU--UGGCUaUUGGGCCUACAGuu -5'
3103 5' -50.3 NC_001493.1 + 124124 0.68 0.965127
Target:  5'- cAGCCGcaGCCGAaGGUCCGGGUGUCc- -3'
miRNA:   3'- uUUGGU--UGGCUaUUGGGCCUACAGuu -5'
3103 5' -50.3 NC_001493.1 + 40168 0.68 0.961528
Target:  5'- gAGACCccggAACCGAUAuUCCGGAcgcuaUGUCAc -3'
miRNA:   3'- -UUUGG----UUGGCUAUuGGGCCU-----ACAGUu -5'
3103 5' -50.3 NC_001493.1 + 101416 0.69 0.944584
Target:  5'- gAAGCCGACUGGUGAUCUcaagacGAUGUCAc -3'
miRNA:   3'- -UUUGGUUGGCUAUUGGGc-----CUACAGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.