miRNA display CGI


Results 81 - 100 of 422 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31030 3' -56.9 NC_006560.1 + 115742 0.67 0.831752
Target:  5'- -cGCGggaGGCGGCGcAGCUGaucCACCCg -3'
miRNA:   3'- guCGCag-UCGUCGC-UUGGCgu-GUGGG- -5'
31030 3' -56.9 NC_006560.1 + 18854 0.67 0.831752
Target:  5'- -cGCGUCucGCcucugGGCgGGGCCGC-CGCCCc -3'
miRNA:   3'- guCGCAGu-CG-----UCG-CUUGGCGuGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 16633 0.67 0.831752
Target:  5'- gGGUGUacgccgGGCGGCGGuuGCgCGC-CGCCCg -3'
miRNA:   3'- gUCGCAg-----UCGUCGCU--UG-GCGuGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 140361 0.67 0.831752
Target:  5'- gGGCGUCGGC-GCGG--CGCG-GCCCg -3'
miRNA:   3'- gUCGCAGUCGuCGCUugGCGUgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 135339 0.67 0.831752
Target:  5'- cCAGcCGUCGuCGGCcGGCCGCGgACCg -3'
miRNA:   3'- -GUC-GCAGUcGUCGcUUGGCGUgUGGg -5'
31030 3' -56.9 NC_006560.1 + 131333 0.67 0.831752
Target:  5'- gCGGCcUCGGCcuCGAGCCcCGCGCCg -3'
miRNA:   3'- -GUCGcAGUCGucGCUUGGcGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 123198 0.67 0.831752
Target:  5'- -cGcCGUCucgcuGCGGCGGGCCGUccuCGCCg -3'
miRNA:   3'- guC-GCAGu----CGUCGCUUGGCGu--GUGGg -5'
31030 3' -56.9 NC_006560.1 + 97709 0.67 0.831752
Target:  5'- aCAaCGUCAucauGCAgaacucgaugcGCGuGGCCGCGCGCCCc -3'
miRNA:   3'- -GUcGCAGU----CGU-----------CGC-UUGGCGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 118649 0.67 0.839963
Target:  5'- uGGCGU--GgGGCG-GCCGCaACGCCCc -3'
miRNA:   3'- gUCGCAguCgUCGCuUGGCG-UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 133959 0.67 0.839963
Target:  5'- gGGgGUCGuCGG-GGGCCGCGgCGCCCc -3'
miRNA:   3'- gUCgCAGUcGUCgCUUGGCGU-GUGGG- -5'
31030 3' -56.9 NC_006560.1 + 100703 0.67 0.839963
Target:  5'- cCAGCGcCAGUucgccGGCGucGCCGCu--CCCg -3'
miRNA:   3'- -GUCGCaGUCG-----UCGCu-UGGCGuguGGG- -5'
31030 3' -56.9 NC_006560.1 + 96223 0.67 0.839963
Target:  5'- -cGCGUCGGUcgaGGCcGGCCGCGCgACgCu -3'
miRNA:   3'- guCGCAGUCG---UCGcUUGGCGUG-UGgG- -5'
31030 3' -56.9 NC_006560.1 + 94637 0.67 0.839963
Target:  5'- uGGCGUCG--GGCG-ACCGCGC-CCa -3'
miRNA:   3'- gUCGCAGUcgUCGCuUGGCGUGuGGg -5'
31030 3' -56.9 NC_006560.1 + 93047 0.67 0.839963
Target:  5'- uCGGCGgcuucGCGGCGcACgCGCccgGCGCCCg -3'
miRNA:   3'- -GUCGCagu--CGUCGCuUG-GCG---UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 60662 0.67 0.839963
Target:  5'- -cGCG-CGGgGGCGAGgggcccCCGCGC-CCCu -3'
miRNA:   3'- guCGCaGUCgUCGCUU------GGCGUGuGGG- -5'
31030 3' -56.9 NC_006560.1 + 56793 0.67 0.839963
Target:  5'- gGGCGUCuucccgcGCAaCGAggACCGCGguCCCg -3'
miRNA:   3'- gUCGCAGu------CGUcGCU--UGGCGUguGGG- -5'
31030 3' -56.9 NC_006560.1 + 53831 0.67 0.839963
Target:  5'- aCGGCGggcCGGCccgGGCcGGCCG-GCACCCg -3'
miRNA:   3'- -GUCGCa--GUCG---UCGcUUGGCgUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 45728 0.67 0.839963
Target:  5'- gCGGCGcaGGCGcgccGCGGGCuCGCGCcCCCg -3'
miRNA:   3'- -GUCGCagUCGU----CGCUUG-GCGUGuGGG- -5'
31030 3' -56.9 NC_006560.1 + 43712 0.67 0.839963
Target:  5'- cCAGCGagcGCAGCGAcucGCCGgGCGCg- -3'
miRNA:   3'- -GUCGCaguCGUCGCU---UGGCgUGUGgg -5'
31030 3' -56.9 NC_006560.1 + 146108 0.67 0.839963
Target:  5'- -cGCGUCggccaGGCAGCGcGCCagguugcagucGCGC-CCCa -3'
miRNA:   3'- guCGCAG-----UCGUCGCuUGG-----------CGUGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.