miRNA display CGI


Results 21 - 40 of 422 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31030 3' -56.9 NC_006560.1 + 3699 0.76 0.360104
Target:  5'- gAGCGUCAGC-GCG--UCGCGCACCa -3'
miRNA:   3'- gUCGCAGUCGuCGCuuGGCGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 83446 0.76 0.344528
Target:  5'- uCGGCGcggCGGCGGCGAgagcuGCUGCACGCgCg -3'
miRNA:   3'- -GUCGCa--GUCGUCGCU-----UGGCGUGUGgG- -5'
31030 3' -56.9 NC_006560.1 + 22801 0.76 0.329443
Target:  5'- aCGGCuacGcCAGCGGCGAGCC-CugGCCCg -3'
miRNA:   3'- -GUCG---CaGUCGUCGCUUGGcGugUGGG- -5'
31030 3' -56.9 NC_006560.1 + 130260 0.75 0.401145
Target:  5'- uGGCGUCG--AGCGAGCUGCAgGCCUu -3'
miRNA:   3'- gUCGCAGUcgUCGCUUGGCGUgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 92785 0.75 0.392701
Target:  5'- -cGcCGUCaagAGCcuGGgGAACCGCACGCCCa -3'
miRNA:   3'- guC-GCAG---UCG--UCgCUUGGCGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 42868 0.75 0.366471
Target:  5'- gGGCGUCAGCAGCcgcuccgccuCCGCcagcCGCCCg -3'
miRNA:   3'- gUCGCAGUCGUCGcuu-------GGCGu---GUGGG- -5'
31030 3' -56.9 NC_006560.1 + 135076 0.75 0.384374
Target:  5'- uCGGCGUCGGgGGCGccgccguACCGgCGCACCa -3'
miRNA:   3'- -GUCGCAGUCgUCGCu------UGGC-GUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 49746 0.75 0.392701
Target:  5'- cCGGCGguacgCGGCccacgcgcGCGAaacccGCCGCGCGCCCg -3'
miRNA:   3'- -GUCGCa----GUCGu-------CGCU-----UGGCGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 129076 0.75 0.401145
Target:  5'- -uGCG-CGGCGGCGAccccggcgugucGCUGCAgGCCCg -3'
miRNA:   3'- guCGCaGUCGUCGCU------------UGGCGUgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 21961 0.75 0.367272
Target:  5'- aAGCGgCGGUGGCGAccgugccgaccauGCCGCGCGCuCCg -3'
miRNA:   3'- gUCGCaGUCGUCGCU-------------UGGCGUGUG-GG- -5'
31030 3' -56.9 NC_006560.1 + 58900 0.75 0.376165
Target:  5'- gAGCGUC-GCGGCGcggagcuCCGuCGCGCCCg -3'
miRNA:   3'- gUCGCAGuCGUCGCuu-----GGC-GUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 27481 0.75 0.409704
Target:  5'- cCAGCacgccCGGCAGCGu-CCGCGCGCUCg -3'
miRNA:   3'- -GUCGca---GUCGUCGCuuGGCGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 9960 0.75 0.368074
Target:  5'- gGGCGUCGGCgGGCGAGCgGCcucggGCAgCCg -3'
miRNA:   3'- gUCGCAGUCG-UCGCUUGgCG-----UGUgGG- -5'
31030 3' -56.9 NC_006560.1 + 117994 0.75 0.392701
Target:  5'- gCGGCGcccgCGGCGGCGGccgagGCCGCggcGCACCUg -3'
miRNA:   3'- -GUCGCa---GUCGUCGCU-----UGGCG---UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 2217 0.75 0.384374
Target:  5'- cCAGCGcCAgGUAGaCGGGCCGCagcggcGCACCCa -3'
miRNA:   3'- -GUCGCaGU-CGUC-GCUUGGCG------UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 23557 0.74 0.427157
Target:  5'- gGGCuUCGGCGGCGAccucGCCGCcguGCCCg -3'
miRNA:   3'- gUCGcAGUCGUCGCU----UGGCGug-UGGG- -5'
31030 3' -56.9 NC_006560.1 + 3496 0.74 0.427157
Target:  5'- uCGGCGUCGGCGGCGuccagcaggGGgCGCAgGCUCu -3'
miRNA:   3'- -GUCGCAGUCGUCGC---------UUgGCGUgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 2070 0.74 0.436047
Target:  5'- gCGGCG-CGGCGGCGGgguCCGgGgGCCCg -3'
miRNA:   3'- -GUCGCaGUCGUCGCUu--GGCgUgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 78065 0.74 0.427157
Target:  5'- uGGCGgcCGGCGGCGcGGCCGCgGCGCUCg -3'
miRNA:   3'- gUCGCa-GUCGUCGC-UUGGCG-UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 131847 0.74 0.427157
Target:  5'- gCGGCGgCGGCGGCGAcGCgGCGCGCgCu -3'
miRNA:   3'- -GUCGCaGUCGUCGCU-UGgCGUGUGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.