miRNA display CGI


Results 61 - 80 of 422 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31030 3' -56.9 NC_006560.1 + 16399 0.73 0.51071
Target:  5'- gGGCGUCgccuggAGCcGCGGuGCCGCcCGCCCg -3'
miRNA:   3'- gUCGCAG------UCGuCGCU-UGGCGuGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 145824 0.73 0.482025
Target:  5'- cCGGCcUCGcGCGGCGGGCCGgggGCGCCCc -3'
miRNA:   3'- -GUCGcAGU-CGUCGCUUGGCg--UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 90515 0.73 0.509742
Target:  5'- uGGCGUCGGUcauggccGGCGAcGCCGCgcucGCGCUCg -3'
miRNA:   3'- gUCGCAGUCG-------UCGCU-UGGCG----UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 51970 0.73 0.472636
Target:  5'- -cGUGUCcgGGCGGCGGGCgGCGgGCCUg -3'
miRNA:   3'- guCGCAG--UCGUCGCUUGgCGUgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 2021 0.73 0.51071
Target:  5'- uCGGCGUCggcgAGCAGCGuguCgGCGCGgCCg -3'
miRNA:   3'- -GUCGCAG----UCGUCGCuu-GgCGUGUgGG- -5'
31030 3' -56.9 NC_006560.1 + 3889 0.73 0.472636
Target:  5'- gCGGCGUCGGCGGCGucgGCgGCgucgGCGuCCCc -3'
miRNA:   3'- -GUCGCAGUCGUCGCu--UGgCG----UGU-GGG- -5'
31030 3' -56.9 NC_006560.1 + 96110 0.73 0.500106
Target:  5'- gCGGCGgCGGCGGCcccGACCGCcgaccccgccgccACGCCCg -3'
miRNA:   3'- -GUCGCaGUCGUCGc--UUGGCG-------------UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 132102 0.73 0.482025
Target:  5'- -cGCGUguGCGGCGGGCCGgACGgCg -3'
miRNA:   3'- guCGCAguCGUCGCUUGGCgUGUgGg -5'
31030 3' -56.9 NC_006560.1 + 88670 0.73 0.51071
Target:  5'- gUAGCuGUgCGGC-GCGGGCUGCGCGCCg -3'
miRNA:   3'- -GUCG-CA-GUCGuCGCUUGGCGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 70765 0.73 0.491503
Target:  5'- uGGgG-CuGCAGuCGGACCGCGCGCUCg -3'
miRNA:   3'- gUCgCaGuCGUC-GCUUGGCGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 4887 0.73 0.482025
Target:  5'- gCGGCGcCGGCGG-GGGCCGCgucGCGCUCg -3'
miRNA:   3'- -GUCGCaGUCGUCgCUUGGCG---UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 15292 0.73 0.482025
Target:  5'- cCGGCG-CGGCGGCGGugGCCucGgGCGCCCc -3'
miRNA:   3'- -GUCGCaGUCGUCGCU--UGG--CgUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 44903 0.73 0.472636
Target:  5'- -cGCGguccCGGCGGCGAACCcCGC-CCCg -3'
miRNA:   3'- guCGCa---GUCGUCGCUUGGcGUGuGGG- -5'
31030 3' -56.9 NC_006560.1 + 117560 0.73 0.46334
Target:  5'- aCGGCG--GGCGGCGccGCCGC-CGCCCg -3'
miRNA:   3'- -GUCGCagUCGUCGCu-UGGCGuGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 17422 0.73 0.46334
Target:  5'- gCAGCc---GCGGCGAAUCGCGCGCuCCg -3'
miRNA:   3'- -GUCGcaguCGUCGCUUGGCGUGUG-GG- -5'
31030 3' -56.9 NC_006560.1 + 131163 0.72 0.550002
Target:  5'- gCGGC-UCugGGCGGCGGccGCCGCggggGCGCCCg -3'
miRNA:   3'- -GUCGcAG--UCGUCGCU--UGGCG----UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 18559 0.72 0.550002
Target:  5'- gGGUgGUCggGGCGGCGGACCucuGCGCGCCg -3'
miRNA:   3'- gUCG-CAG--UCGUCGCUUGG---CGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 108426 0.72 0.540082
Target:  5'- gUAGcCGUCGGCGG-GAgacGCCGCgcccaGCGCCCg -3'
miRNA:   3'- -GUC-GCAGUCGUCgCU---UGGCG-----UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 8995 0.72 0.550002
Target:  5'- aCGGCGccCAGCccgAGCGcGCCcCGCACCCa -3'
miRNA:   3'- -GUCGCa-GUCG---UCGCuUGGcGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 70036 0.72 0.548014
Target:  5'- uGGCGgagaacauugagCAGCugcuccGCGAGCUGCACGCCg -3'
miRNA:   3'- gUCGCa-----------GUCGu-----CGCUUGGCGUGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.