miRNA display CGI


Results 41 - 60 of 422 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31030 3' -56.9 NC_006560.1 + 16300 0.74 0.427157
Target:  5'- gGGCG-CGGCGgggcGCGGGCC-CGCGCCCg -3'
miRNA:   3'- gUCGCaGUCGU----CGCUUGGcGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 3496 0.74 0.427157
Target:  5'- uCGGCGUCGGCGGCGuccagcaggGGgCGCAgGCUCu -3'
miRNA:   3'- -GUCGCAGUCGUCGC---------UUgGCGUgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 131847 0.74 0.427157
Target:  5'- gCGGCGgCGGCGGCGAcGCgGCGCGCgCu -3'
miRNA:   3'- -GUCGCaGUCGUCGCU-UGgCGUGUGgG- -5'
31030 3' -56.9 NC_006560.1 + 2070 0.74 0.436047
Target:  5'- gCGGCG-CGGCGGCGGgguCCGgGgGCCCg -3'
miRNA:   3'- -GUCGCaGUCGUCGCUu--GGCgUgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 3550 0.74 0.436047
Target:  5'- uCGGCGgCGGCGGCGccGACggaGCGCACCUg -3'
miRNA:   3'- -GUCGCaGUCGUCGC--UUGg--CGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 61264 0.74 0.445043
Target:  5'- gAGCGg-AGCGGCucGcCCGCACGCCCc -3'
miRNA:   3'- gUCGCagUCGUCGcuU-GGCGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 78605 0.74 0.445043
Target:  5'- -cGUGUCuGGCGGCGcAGCUGCcCGCCCu -3'
miRNA:   3'- guCGCAG-UCGUCGC-UUGGCGuGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 86404 0.74 0.445043
Target:  5'- gCAGgG-CAGCAGgcCGuGCUGCACGCCCg -3'
miRNA:   3'- -GUCgCaGUCGUC--GCuUGGCGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 30701 0.74 0.445043
Target:  5'- cCGGUGgccccgCGGCcGCGAGCCGCcAUGCCCc -3'
miRNA:   3'- -GUCGCa-----GUCGuCGCUUGGCG-UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 68181 0.74 0.445043
Target:  5'- cCGGCG-CGcccauccgcGUGGCGGACgCGCGCGCCCa -3'
miRNA:   3'- -GUCGCaGU---------CGUCGCUUG-GCGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 100484 0.74 0.454142
Target:  5'- -cGCGggaCAGCGGgGGGCCGCgGCGCUCg -3'
miRNA:   3'- guCGCa--GUCGUCgCUUGGCG-UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 55916 0.74 0.454142
Target:  5'- gAGgGagGGcCGGCGGACCauGCGCACCCg -3'
miRNA:   3'- gUCgCagUC-GUCGCUUGG--CGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 142674 0.74 0.454142
Target:  5'- gGGUGaggggCGGCGGCGGACCGgaggggGCGCCCg -3'
miRNA:   3'- gUCGCa----GUCGUCGCUUGGCg-----UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 519 0.74 0.454142
Target:  5'- gGGCGcCggggGGCGGCGGccgGCCGCGC-CCCg -3'
miRNA:   3'- gUCGCaG----UCGUCGCU---UGGCGUGuGGG- -5'
31030 3' -56.9 NC_006560.1 + 117560 0.73 0.46334
Target:  5'- aCGGCG--GGCGGCGccGCCGC-CGCCCg -3'
miRNA:   3'- -GUCGCagUCGUCGCu-UGGCGuGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 17422 0.73 0.46334
Target:  5'- gCAGCc---GCGGCGAAUCGCGCGCuCCg -3'
miRNA:   3'- -GUCGcaguCGUCGCUUGGCGUGUG-GG- -5'
31030 3' -56.9 NC_006560.1 + 44903 0.73 0.472636
Target:  5'- -cGCGguccCGGCGGCGAACCcCGC-CCCg -3'
miRNA:   3'- guCGCa---GUCGUCGCUUGGcGUGuGGG- -5'
31030 3' -56.9 NC_006560.1 + 51970 0.73 0.472636
Target:  5'- -cGUGUCcgGGCGGCGGGCgGCGgGCCUg -3'
miRNA:   3'- guCGCAG--UCGUCGCUUGgCGUgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 134001 0.73 0.472636
Target:  5'- cCAG-GUCGGCGGCGcGCUGCucgcggucgaGCGCCCc -3'
miRNA:   3'- -GUCgCAGUCGUCGCuUGGCG----------UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 3889 0.73 0.472636
Target:  5'- gCGGCGUCGGCGGCGucgGCgGCgucgGCGuCCCc -3'
miRNA:   3'- -GUCGCAGUCGUCGCu--UGgCG----UGU-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.