miRNA display CGI


Results 61 - 80 of 422 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31030 3' -56.9 NC_006560.1 + 15292 0.73 0.482025
Target:  5'- cCGGCG-CGGCGGCGGugGCCucGgGCGCCCc -3'
miRNA:   3'- -GUCGCaGUCGUCGCU--UGG--CgUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 4887 0.73 0.482025
Target:  5'- gCGGCGcCGGCGG-GGGCCGCgucGCGCUCg -3'
miRNA:   3'- -GUCGCaGUCGUCgCUUGGCG---UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 145824 0.73 0.482025
Target:  5'- cCGGCcUCGcGCGGCGGGCCGgggGCGCCCc -3'
miRNA:   3'- -GUCGcAGU-CGUCGCUUGGCg--UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 132102 0.73 0.482025
Target:  5'- -cGCGUguGCGGCGGGCCGgACGgCg -3'
miRNA:   3'- guCGCAguCGUCGCUUGGCgUGUgGg -5'
31030 3' -56.9 NC_006560.1 + 16513 0.73 0.48865
Target:  5'- aCAGCGgcagccgCAGCAGCuccgcggcgcugggGcGCCGCGCGCCa -3'
miRNA:   3'- -GUCGCa------GUCGUCG--------------CuUGGCGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 35450 0.73 0.491503
Target:  5'- gGGCGacCGGCcGCGAuuuauuGCCGCAuCACCCg -3'
miRNA:   3'- gUCGCa-GUCGuCGCU------UGGCGU-GUGGG- -5'
31030 3' -56.9 NC_006560.1 + 126517 0.73 0.491503
Target:  5'- aGGCGcgCAcGCAGCGGACCGCG-GCCa -3'
miRNA:   3'- gUCGCa-GU-CGUCGCUUGGCGUgUGGg -5'
31030 3' -56.9 NC_006560.1 + 70765 0.73 0.491503
Target:  5'- uGGgG-CuGCAGuCGGACCGCGCGCUCg -3'
miRNA:   3'- gUCgCaGuCGUC-GCUUGGCGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 96110 0.73 0.500106
Target:  5'- gCGGCGgCGGCGGCcccGACCGCcgaccccgccgccACGCCCg -3'
miRNA:   3'- -GUCGCaGUCGUCGc--UUGGCG-------------UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 47286 0.73 0.501066
Target:  5'- gAGCGcCugcGCGGCGGACgCGCuCGCCCc -3'
miRNA:   3'- gUCGCaGu--CGUCGCUUG-GCGuGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 39629 0.73 0.509742
Target:  5'- gGGCGUCGGCguccgggcgcGGCGGagucuccgcucggGCCGCggccGCGCCCc -3'
miRNA:   3'- gUCGCAGUCG----------UCGCU-------------UGGCG----UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 90515 0.73 0.509742
Target:  5'- uGGCGUCGGUcauggccGGCGAcGCCGCgcucGCGCUCg -3'
miRNA:   3'- gUCGCAGUCG-------UCGCU-UGGCG----UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 2021 0.73 0.51071
Target:  5'- uCGGCGUCggcgAGCAGCGuguCgGCGCGgCCg -3'
miRNA:   3'- -GUCGCAG----UCGUCGCuu-GgCGUGUgGG- -5'
31030 3' -56.9 NC_006560.1 + 16399 0.73 0.51071
Target:  5'- gGGCGUCgccuggAGCcGCGGuGCCGCcCGCCCg -3'
miRNA:   3'- gUCGCAG------UCGuCGCU-UGGCGuGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 88670 0.73 0.51071
Target:  5'- gUAGCuGUgCGGC-GCGGGCUGCGCGCCg -3'
miRNA:   3'- -GUCG-CA-GUCGuCGCUUGGCGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 103106 0.72 0.520431
Target:  5'- -cGCGgaccCGGCGGCGGacgcggggGCgGCGCGCCCc -3'
miRNA:   3'- guCGCa---GUCGUCGCU--------UGgCGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 28218 0.72 0.520431
Target:  5'- gAGCGUCGGCc-CGGGCCGC-CGgCCg -3'
miRNA:   3'- gUCGCAGUCGucGCUUGGCGuGUgGG- -5'
31030 3' -56.9 NC_006560.1 + 3367 0.72 0.529241
Target:  5'- uCGGCGUCGGCgGGCGGGCgggcgggCGCGgGCCg -3'
miRNA:   3'- -GUCGCAGUCG-UCGCUUG-------GCGUgUGGg -5'
31030 3' -56.9 NC_006560.1 + 4164 0.72 0.529241
Target:  5'- aCGGCGgCGGCGGCGugggccaggccccAGCCGaaGCGCCCg -3'
miRNA:   3'- -GUCGCaGUCGUCGC-------------UUGGCg-UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 121815 0.72 0.529241
Target:  5'- cCAGCuGcCGGCcgaacaucgcggaGGCGGGgCGCGCGCCCg -3'
miRNA:   3'- -GUCG-CaGUCG-------------UCGCUUgGCGUGUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.