miRNA display CGI


Results 81 - 100 of 422 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31030 3' -56.9 NC_006560.1 + 102559 0.72 0.530223
Target:  5'- aCGGCGUucucCAGCGccGCG-GCCGC-CGCCCg -3'
miRNA:   3'- -GUCGCA----GUCGU--CGCuUGGCGuGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 108426 0.72 0.540082
Target:  5'- gUAGcCGUCGGCGG-GAgacGCCGCgcccaGCGCCCg -3'
miRNA:   3'- -GUC-GCAGUCGUCgCU---UGGCG-----UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 51622 0.72 0.540082
Target:  5'- aCGGCGggcGCGGCGAGcCCGCcgugggcgccuACACCCc -3'
miRNA:   3'- -GUCGCaguCGUCGCUU-GGCG-----------UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 70036 0.72 0.548014
Target:  5'- uGGCGgagaacauugagCAGCugcuccGCGAGCUGCACGCCg -3'
miRNA:   3'- gUCGCa-----------GUCGu-----CGCUUGGCGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 127284 0.72 0.550002
Target:  5'- gGGCGUcCAGguGCGGggguGCgGCcACGCCCc -3'
miRNA:   3'- gUCGCA-GUCguCGCU----UGgCG-UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 8995 0.72 0.550002
Target:  5'- aCGGCGccCAGCccgAGCGcGCCcCGCACCCa -3'
miRNA:   3'- -GUCGCa-GUCG---UCGCuUGGcGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 128819 0.72 0.550002
Target:  5'- -cGCGUCGGC-GCGcGCCGaCGCGgCCg -3'
miRNA:   3'- guCGCAGUCGuCGCuUGGC-GUGUgGG- -5'
31030 3' -56.9 NC_006560.1 + 12987 0.72 0.550002
Target:  5'- gAGCauGcCGGCGGCGuccACCGuCACGCCCc -3'
miRNA:   3'- gUCG--CaGUCGUCGCu--UGGC-GUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 21006 0.72 0.550002
Target:  5'- gGGCGg-GGCGGCGGGCC-CGC-CCCg -3'
miRNA:   3'- gUCGCagUCGUCGCUUGGcGUGuGGG- -5'
31030 3' -56.9 NC_006560.1 + 131163 0.72 0.550002
Target:  5'- gCGGC-UCugGGCGGCGGccGCCGCggggGCGCCCg -3'
miRNA:   3'- -GUCGcAG--UCGUCGCU--UGGCG----UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 18559 0.72 0.550002
Target:  5'- gGGUgGUCggGGCGGCGGACCucuGCGCGCCg -3'
miRNA:   3'- gUCG-CAG--UCGUCGCUUGG---CGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 83505 0.72 0.559978
Target:  5'- aGGCGcgcgaGGgGGCGGGCCGCgggcgcGCGCCCg -3'
miRNA:   3'- gUCGCag---UCgUCGCUUGGCG------UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 39318 0.72 0.559978
Target:  5'- gGGCGgggCGGUggGGCgGGGCCGCcCGCCCu -3'
miRNA:   3'- gUCGCa--GUCG--UCG-CUUGGCGuGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 54672 0.72 0.559978
Target:  5'- gGGCG-CGGCAGCc-GCCGgcCGCGCCCu -3'
miRNA:   3'- gUCGCaGUCGUCGcuUGGC--GUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 130669 0.72 0.567994
Target:  5'- -cGCGUCGGCGGCGucgcuggcgguCCGCaucgACACCg -3'
miRNA:   3'- guCGCAGUCGUCGCuu---------GGCG----UGUGGg -5'
31030 3' -56.9 NC_006560.1 + 22274 0.72 0.568998
Target:  5'- -cGCGcCcccgccgaccccgGGCGGCGcGCCGCACGCCg -3'
miRNA:   3'- guCGCaG-------------UCGUCGCuUGGCGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 5343 0.72 0.570003
Target:  5'- cCGGCGUCcuCGGCGGGCCGUcguccggguccgGCgaGCCCg -3'
miRNA:   3'- -GUCGCAGucGUCGCUUGGCG------------UG--UGGG- -5'
31030 3' -56.9 NC_006560.1 + 99216 0.72 0.570003
Target:  5'- aAGCGaCcGCGGCGGGCUGCG-GCCCg -3'
miRNA:   3'- gUCGCaGuCGUCGCUUGGCGUgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 108046 0.72 0.570003
Target:  5'- uCGGCGUCGGCGcGCGcgUCGCu--CCCg -3'
miRNA:   3'- -GUCGCAGUCGU-CGCuuGGCGuguGGG- -5'
31030 3' -56.9 NC_006560.1 + 117323 0.72 0.570003
Target:  5'- gAGgGUgAGCGGuCGGGcCCGCcGCGCCCg -3'
miRNA:   3'- gUCgCAgUCGUC-GCUU-GGCG-UGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.