miRNA display CGI


Results 61 - 80 of 422 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31030 3' -56.9 NC_006560.1 + 22874 0.66 0.855818
Target:  5'- gGGCGaCAGCcGCccgGGGCUcugggGCGCGCCCg -3'
miRNA:   3'- gUCGCaGUCGuCG---CUUGG-----CGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 25456 0.66 0.851143
Target:  5'- aCGGCGagcCGGCGGCcgccGAggacugguagccggcGCCGC-CGCCCg -3'
miRNA:   3'- -GUCGCa--GUCGUCG----CU---------------UGGCGuGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 22921 0.66 0.847987
Target:  5'- -cGCGcCGGCGcuaCGAggccGCCgGCGCGCCCg -3'
miRNA:   3'- guCGCaGUCGUc--GCU----UGG-CGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 81961 0.66 0.847987
Target:  5'- gCAGCG-CAGgGGCGggUUGCugGgcagguagggcCCCg -3'
miRNA:   3'- -GUCGCaGUCgUCGCuuGGCGugU-----------GGG- -5'
31030 3' -56.9 NC_006560.1 + 48450 0.66 0.847987
Target:  5'- -cGCGUCGGgAGgGGcugcccgcguACUGCGCgGCCCu -3'
miRNA:   3'- guCGCAGUCgUCgCU----------UGGCGUG-UGGG- -5'
31030 3' -56.9 NC_006560.1 + 95951 0.66 0.847987
Target:  5'- aAGCucgCGGcCGGCGGGCCGgagucgACGCCCg -3'
miRNA:   3'- gUCGca-GUC-GUCGCUUGGCg-----UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 107327 0.66 0.847987
Target:  5'- -cGCaG-CAGCAGCuGGCCGgGgGCCCg -3'
miRNA:   3'- guCG-CaGUCGUCGcUUGGCgUgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 138325 0.66 0.847987
Target:  5'- gAGCGcCAGCGGCuGGAgCGCugGugggacacgaCCCu -3'
miRNA:   3'- gUCGCaGUCGUCG-CUUgGCGugU----------GGG- -5'
31030 3' -56.9 NC_006560.1 + 142097 0.66 0.847987
Target:  5'- gCGGCGcggaggauuccCGGCAGCGAGCCGgGCguaaacaagGCCg -3'
miRNA:   3'- -GUCGCa----------GUCGUCGCUUGGCgUG---------UGGg -5'
31030 3' -56.9 NC_006560.1 + 22363 0.66 0.847987
Target:  5'- aGGaCGaCGGCGGCGA--CGgGCACCCc -3'
miRNA:   3'- gUC-GCaGUCGUCGCUugGCgUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 34306 0.66 0.847987
Target:  5'- -uGUGUCuGCGcCGAggGCCGC-CGCCCc -3'
miRNA:   3'- guCGCAGuCGUcGCU--UGGCGuGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 142197 0.66 0.847987
Target:  5'- aGGCG-CGGCcucCGGGCgGCGCGCCa -3'
miRNA:   3'- gUCGCaGUCGuc-GCUUGgCGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 85908 0.66 0.847987
Target:  5'- cCGGCGgucgcgCGGcCAGCGcggcGGCCGC-CGCCg -3'
miRNA:   3'- -GUCGCa-----GUC-GUCGC----UUGGCGuGUGGg -5'
31030 3' -56.9 NC_006560.1 + 82139 0.66 0.847987
Target:  5'- -uGUGUCGGCGcCGAGCgCGgGCuACCCc -3'
miRNA:   3'- guCGCAGUCGUcGCUUG-GCgUG-UGGG- -5'
31030 3' -56.9 NC_006560.1 + 46990 0.66 0.847987
Target:  5'- -cGCGUCuccuucgaggAGCccGCGGGCCGCGC-CCg -3'
miRNA:   3'- guCGCAG----------UCGu-CGCUUGGCGUGuGGg -5'
31030 3' -56.9 NC_006560.1 + 36928 0.66 0.847987
Target:  5'- gAGCGUCuGGCGGC--GCUGCGuC-CCCg -3'
miRNA:   3'- gUCGCAG-UCGUCGcuUGGCGU-GuGGG- -5'
31030 3' -56.9 NC_006560.1 + 7701 0.66 0.847194
Target:  5'- gCGGCGcUCuauccccucugcgAGCAGCcguCUGCGCACCUg -3'
miRNA:   3'- -GUCGC-AG-------------UCGUCGcuuGGCGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 100703 0.67 0.839963
Target:  5'- cCAGCGcCAGUucgccGGCGucGCCGCu--CCCg -3'
miRNA:   3'- -GUCGCaGUCG-----UCGCu-UGGCGuguGGG- -5'
31030 3' -56.9 NC_006560.1 + 96223 0.67 0.839963
Target:  5'- -cGCGUCGGUcgaGGCcGGCCGCGCgACgCu -3'
miRNA:   3'- guCGCAGUCG---UCGcUUGGCGUG-UGgG- -5'
31030 3' -56.9 NC_006560.1 + 94637 0.67 0.839963
Target:  5'- uGGCGUCG--GGCG-ACCGCGC-CCa -3'
miRNA:   3'- gUCGCAGUcgUCGCuUGGCGUGuGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.