miRNA display CGI


Results 61 - 80 of 422 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31030 3' -56.9 NC_006560.1 + 12987 0.72 0.550002
Target:  5'- gAGCauGcCGGCGGCGuccACCGuCACGCCCc -3'
miRNA:   3'- gUCG--CaGUCGUCGCu--UGGC-GUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 13242 0.71 0.580071
Target:  5'- cCAGCG-CGGCAgguuGCGGACgGgGCACUCg -3'
miRNA:   3'- -GUCGCaGUCGU----CGCUUGgCgUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 14089 0.8 0.20524
Target:  5'- gCAGCGUCGGCAGCaccgguggaGGACgGCccccGCGCCCa -3'
miRNA:   3'- -GUCGCAGUCGUCG---------CUUGgCG----UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 14203 0.69 0.741089
Target:  5'- gGGCGUgGGguGguCGGGCgGgGCGCCCg -3'
miRNA:   3'- gUCGCAgUCguC--GCUUGgCgUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 14282 0.7 0.651191
Target:  5'- gCGGCGUCGcCGGCGAG-CGCgGCGCCg -3'
miRNA:   3'- -GUCGCAGUcGUCGCUUgGCG-UGUGGg -5'
31030 3' -56.9 NC_006560.1 + 14431 0.67 0.823361
Target:  5'- aGGCGUUgucugGGCGGCGGuCCGCcggggGCAUCUu -3'
miRNA:   3'- gUCGCAG-----UCGUCGCUuGGCG-----UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 15063 0.69 0.72154
Target:  5'- aCGGCGUCGGUGGgGGGCgGgggcuCugGCCCc -3'
miRNA:   3'- -GUCGCAGUCGUCgCUUGgC-----GugUGGG- -5'
31030 3' -56.9 NC_006560.1 + 15292 0.73 0.482025
Target:  5'- cCGGCG-CGGCGGCGGugGCCucGgGCGCCCc -3'
miRNA:   3'- -GUCGCaGUCGUCGCU--UGG--CgUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 15412 0.71 0.630829
Target:  5'- cCGGCacggaCAGCAGgcccCGGGCgGCGCGCCCg -3'
miRNA:   3'- -GUCGca---GUCGUC----GCUUGgCGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 15707 0.69 0.72154
Target:  5'- gGGCGcCgcaggGGCGGCGGGCCggcacggggccgGCACGCCg -3'
miRNA:   3'- gUCGCaG-----UCGUCGCUUGG------------CGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 15798 0.78 0.249242
Target:  5'- cCGGCGcCGGCGGCG-ACCGCGgccgacagcCGCCCg -3'
miRNA:   3'- -GUCGCaGUCGUCGCuUGGCGU---------GUGGG- -5'
31030 3' -56.9 NC_006560.1 + 15895 0.78 0.261396
Target:  5'- cCGGCGcCAGCAGCGAGgCGUuCACCa -3'
miRNA:   3'- -GUCGCaGUCGUCGCUUgGCGuGUGGg -5'
31030 3' -56.9 NC_006560.1 + 16123 0.66 0.878082
Target:  5'- gGGCGcgAGCAGgGccaGGCCGCACccggaguagACCCg -3'
miRNA:   3'- gUCGCagUCGUCgC---UUGGCGUG---------UGGG- -5'
31030 3' -56.9 NC_006560.1 + 16199 0.68 0.768746
Target:  5'- --aCGUCGGCcaccGGCGGAgccgggcCCGCGgGCCCg -3'
miRNA:   3'- gucGCAGUCG----UCGCUU-------GGCGUgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 16300 0.74 0.427157
Target:  5'- gGGCG-CGGCGgggcGCGGGCC-CGCGCCCg -3'
miRNA:   3'- gUCGCaGUCGU----CGCUUGGcGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 16399 0.73 0.51071
Target:  5'- gGGCGUCgccuggAGCcGCGGuGCCGCcCGCCCg -3'
miRNA:   3'- gUCGCAG------UCGuCGCU-UGGCGuGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 16513 0.73 0.48865
Target:  5'- aCAGCGgcagccgCAGCAGCuccgcggcgcugggGcGCCGCGCGCCa -3'
miRNA:   3'- -GUCGCa------GUCGUCG--------------CuUGGCGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 16633 0.67 0.831752
Target:  5'- gGGUGUacgccgGGCGGCGGuuGCgCGC-CGCCCg -3'
miRNA:   3'- gUCGCAg-----UCGUCGCU--UG-GCGuGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 17242 0.69 0.705678
Target:  5'- gCGGCG-CAGCAGCcucgccucguggacgGAGCuCGCGuacCACCCc -3'
miRNA:   3'- -GUCGCaGUCGUCG---------------CUUG-GCGU---GUGGG- -5'
31030 3' -56.9 NC_006560.1 + 17352 0.77 0.287145
Target:  5'- cCGGCGUCAgggcGCGGUGGAUCGCGaACCCc -3'
miRNA:   3'- -GUCGCAGU----CGUCGCUUGGCGUgUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.