miRNA display CGI


Results 81 - 100 of 422 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31030 3' -56.9 NC_006560.1 + 17422 0.73 0.46334
Target:  5'- gCAGCc---GCGGCGAAUCGCGCGCuCCg -3'
miRNA:   3'- -GUCGcaguCGUCGCUUGGCGUGUG-GG- -5'
31030 3' -56.9 NC_006560.1 + 17702 0.69 0.720554
Target:  5'- gGGuCGUgGGCGGCGGccggaaaACCG-ACGCCCc -3'
miRNA:   3'- gUC-GCAgUCGUCGCU-------UGGCgUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 17887 0.71 0.630829
Target:  5'- cCAGCGggcgcccCGGCggAGCGcuCCGCGCGCgCCg -3'
miRNA:   3'- -GUCGCa------GUCG--UCGCuuGGCGUGUG-GG- -5'
31030 3' -56.9 NC_006560.1 + 18030 0.66 0.863448
Target:  5'- -cGCGaCGGCuAGCGcGGCCGCcgGgACCCa -3'
miRNA:   3'- guCGCaGUCG-UCGC-UUGGCG--UgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 18138 0.67 0.831752
Target:  5'- gCGGCGaauGCAGUGcggacggaaGGCCGCcCGCCCu -3'
miRNA:   3'- -GUCGCaguCGUCGC---------UUGGCGuGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 18341 0.66 0.870871
Target:  5'- -cGCGgccgaccuGCGGCGcguGGCCGCGC-CCCu -3'
miRNA:   3'- guCGCagu-----CGUCGC---UUGGCGUGuGGG- -5'
31030 3' -56.9 NC_006560.1 + 18559 0.72 0.550002
Target:  5'- gGGUgGUCggGGCGGCGGACCucuGCGCGCCg -3'
miRNA:   3'- gUCG-CAG--UCGUCGCUUGG---CGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 18615 0.69 0.741089
Target:  5'- -cGCGUCGGCGcGCGGcucgucGCCGUucGCGuCCCc -3'
miRNA:   3'- guCGCAGUCGU-CGCU------UGGCG--UGU-GGG- -5'
31030 3' -56.9 NC_006560.1 + 18784 0.71 0.580071
Target:  5'- aCGGCGUCcugcGGCcGCGGgacGCCGUcgcgucGCGCCCa -3'
miRNA:   3'- -GUCGCAG----UCGuCGCU---UGGCG------UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 18854 0.67 0.831752
Target:  5'- -cGCGUCucGCcucugGGCgGGGCCGC-CGCCCc -3'
miRNA:   3'- guCGCAGu-CG-----UCG-CUUGGCGuGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 18923 0.8 0.20524
Target:  5'- cCGGCGUCcgugcGCGGCGuGCCGCGCgggGCCCg -3'
miRNA:   3'- -GUCGCAGu----CGUCGCuUGGCGUG---UGGG- -5'
31030 3' -56.9 NC_006560.1 + 18960 0.7 0.681601
Target:  5'- gGGCGcCgGGCGucGCGGGCCGCgACGCCg -3'
miRNA:   3'- gUCGCaG-UCGU--CGCUUGGCG-UGUGGg -5'
31030 3' -56.9 NC_006560.1 + 19697 0.7 0.641014
Target:  5'- uGGCGUCGG-AGCGgu-CGCACGCCa -3'
miRNA:   3'- gUCGCAGUCgUCGCuugGCGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 20951 0.76 0.352255
Target:  5'- aCGGCGUUuGCGGCGGgccgGCCGCgGCGCCg -3'
miRNA:   3'- -GUCGCAGuCGUCGCU----UGGCG-UGUGGg -5'
31030 3' -56.9 NC_006560.1 + 21006 0.72 0.550002
Target:  5'- gGGCGg-GGCGGCGGGCC-CGC-CCCg -3'
miRNA:   3'- gUCGCagUCGUCGCUUGGcGUGuGGG- -5'
31030 3' -56.9 NC_006560.1 + 21265 0.69 0.701686
Target:  5'- gCGGUGagGGCGGCGGcGgCGCGgCGCCCu -3'
miRNA:   3'- -GUCGCagUCGUCGCU-UgGCGU-GUGGG- -5'
31030 3' -56.9 NC_006560.1 + 21961 0.75 0.367272
Target:  5'- aAGCGgCGGUGGCGAccgugccgaccauGCCGCGCGCuCCg -3'
miRNA:   3'- gUCGCaGUCGUCGCU-------------UGGCGUGUG-GG- -5'
31030 3' -56.9 NC_006560.1 + 22274 0.72 0.568998
Target:  5'- -cGCGcCcccgccgaccccgGGCGGCGcGCCGCACGCCg -3'
miRNA:   3'- guCGCaG-------------UCGUCGCuUGGCGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 22363 0.66 0.847987
Target:  5'- aGGaCGaCGGCGGCGA--CGgGCACCCc -3'
miRNA:   3'- gUC-GCaGUCGUCGCUugGCgUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 22652 0.78 0.274029
Target:  5'- gGGCGUCGccgccgggcGCAGCGAgcgccGCCGCGCGCgCg -3'
miRNA:   3'- gUCGCAGU---------CGUCGCU-----UGGCGUGUGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.