miRNA display CGI


Results 21 - 40 of 422 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31030 3' -56.9 NC_006560.1 + 142097 0.66 0.847987
Target:  5'- gCGGCGcggaggauuccCGGCAGCGAGCCGgGCguaaacaagGCCg -3'
miRNA:   3'- -GUCGCa----------GUCGUCGCUUGGCgUG---------UGGg -5'
31030 3' -56.9 NC_006560.1 + 141933 0.69 0.72154
Target:  5'- gGGCGUCA--GGCGAaggaacACCGagcuGCACCCg -3'
miRNA:   3'- gUCGCAGUcgUCGCU------UGGCg---UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 140361 0.67 0.831752
Target:  5'- gGGCGUCGGC-GCGG--CGCG-GCCCg -3'
miRNA:   3'- gUCGCAGUCGuCGCUugGCGUgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 139876 0.68 0.760261
Target:  5'- uGGUGUugagCAGCAGCacgcccCCGCGgGCCCa -3'
miRNA:   3'- gUCGCA----GUCGUCGcuu---GGCGUgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 139779 0.69 0.72154
Target:  5'- gGGCGcgauGCGGCGAGCCGacggacgaCGCugCCg -3'
miRNA:   3'- gUCGCagu-CGUCGCUUGGC--------GUGugGG- -5'
31030 3' -56.9 NC_006560.1 + 139719 0.69 0.710653
Target:  5'- gCGGgGUCGG-GGCGGAUCGCgcucugggcguggGCGCCCc -3'
miRNA:   3'- -GUCgCAGUCgUCGCUUGGCG-------------UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 139337 0.69 0.72154
Target:  5'- gGGCGccUCGGCGGCccgcgcggggGGGCCGUcgugcggcgcaaACGCCCa -3'
miRNA:   3'- gUCGC--AGUCGUCG----------CUUGGCG------------UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 139052 0.66 0.878082
Target:  5'- gCGGUGUCccGGCccguGcCGGGCCcggggGCGCGCCCu -3'
miRNA:   3'- -GUCGCAG--UCGu---C-GCUUGG-----CGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 138958 0.67 0.814797
Target:  5'- aGGCGaugaccgCGcGCAGCuGGUCGCGCACCCg -3'
miRNA:   3'- gUCGCa------GU-CGUCGcUUGGCGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 138325 0.66 0.847987
Target:  5'- gAGCGcCAGCGGCuGGAgCGCugGugggacacgaCCCu -3'
miRNA:   3'- gUCGCaGUCGUCG-CUUgGCGugU----------GGG- -5'
31030 3' -56.9 NC_006560.1 + 135339 0.67 0.831752
Target:  5'- cCAGcCGUCGuCGGCcGGCCGCGgACCg -3'
miRNA:   3'- -GUC-GCAGUcGUCGcUUGGCGUgUGGg -5'
31030 3' -56.9 NC_006560.1 + 135202 0.68 0.788155
Target:  5'- aCGGCGgccugCAGCuGGCGggUCGCG-GCCUc -3'
miRNA:   3'- -GUCGCa----GUCG-UCGCuuGGCGUgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 135076 0.75 0.384374
Target:  5'- uCGGCGUCGGgGGCGccgccguACCGgCGCACCa -3'
miRNA:   3'- -GUCGCAGUCgUCGCu------UGGC-GUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 134456 0.69 0.691668
Target:  5'- aCGGCGcgGGCGGCcc-CCGCGgGCCCg -3'
miRNA:   3'- -GUCGCagUCGUCGcuuGGCGUgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 134219 0.71 0.620646
Target:  5'- gCGGgGUCGGCcccGCccGCCGCGCgGCCCg -3'
miRNA:   3'- -GUCgCAGUCGu--CGcuUGGCGUG-UGGG- -5'
31030 3' -56.9 NC_006560.1 + 134001 0.73 0.472636
Target:  5'- cCAG-GUCGGCGGCGcGCUGCucgcggucgaGCGCCCc -3'
miRNA:   3'- -GUCgCAGUCGUCGCuUGGCG----------UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 133959 0.67 0.839963
Target:  5'- gGGgGUCGuCGG-GGGCCGCGgCGCCCc -3'
miRNA:   3'- gUCgCAGUcGUCgCUUGGCGU-GUGGG- -5'
31030 3' -56.9 NC_006560.1 + 133813 0.67 0.831752
Target:  5'- gCAGCG-CAGCAGC---UCGUGCuCCCa -3'
miRNA:   3'- -GUCGCaGUCGUCGcuuGGCGUGuGGG- -5'
31030 3' -56.9 NC_006560.1 + 133485 0.69 0.701686
Target:  5'- cCGGCGUCuacgGGCGagcGCGAGCgGCcGCGCCg -3'
miRNA:   3'- -GUCGCAG----UCGU---CGCUUGgCG-UGUGGg -5'
31030 3' -56.9 NC_006560.1 + 133260 0.69 0.72154
Target:  5'- --cCGUC-GCGGUGAACCGgacguCGCGCCCc -3'
miRNA:   3'- gucGCAGuCGUCGCUUGGC-----GUGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.