miRNA display CGI


Results 41 - 60 of 422 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31030 3' -56.9 NC_006560.1 + 133188 0.7 0.665413
Target:  5'- gGGCGUCcGCggggccgccguccagAGCGAACCGCA-GCCg -3'
miRNA:   3'- gUCGCAGuCG---------------UCGCUUGGCGUgUGGg -5'
31030 3' -56.9 NC_006560.1 + 132102 0.73 0.482025
Target:  5'- -cGCGUguGCGGCGGGCCGgACGgCg -3'
miRNA:   3'- guCGCAguCGUCGCUUGGCgUGUgGg -5'
31030 3' -56.9 NC_006560.1 + 131847 0.74 0.427157
Target:  5'- gCGGCGgCGGCGGCGAcGCgGCGCGCgCu -3'
miRNA:   3'- -GUCGCaGUCGUCGCU-UGgCGUGUGgG- -5'
31030 3' -56.9 NC_006560.1 + 131681 0.69 0.731357
Target:  5'- uGGCG--GGCGGgGGGCUGCucCGCCCg -3'
miRNA:   3'- gUCGCagUCGUCgCUUGGCGu-GUGGG- -5'
31030 3' -56.9 NC_006560.1 + 131621 0.71 0.590176
Target:  5'- cCGGCc-CGGCGGCGGucgaGCGCGCCCg -3'
miRNA:   3'- -GUCGcaGUCGUCGCUugg-CGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 131399 0.71 0.610471
Target:  5'- gGGCGcUGGCcGCGGA-CGCGCGCCCc -3'
miRNA:   3'- gUCGCaGUCGuCGCUUgGCGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 131333 0.67 0.831752
Target:  5'- gCGGCcUCGGCcuCGAGCCcCGCGCCg -3'
miRNA:   3'- -GUCGcAGUCGucGCUUGGcGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 131163 0.72 0.550002
Target:  5'- gCGGC-UCugGGCGGCGGccGCCGCggggGCGCCCg -3'
miRNA:   3'- -GUCGcAG--UCGUCGCU--UGGCG----UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 130669 0.72 0.567994
Target:  5'- -cGCGUCGGCGGCGucgcuggcgguCCGCaucgACACCg -3'
miRNA:   3'- guCGCAGUCGUCGCuu---------GGCG----UGUGGg -5'
31030 3' -56.9 NC_006560.1 + 130626 0.69 0.691668
Target:  5'- uGGCGUgGGCccGGCuGGCCGCgauccaggACACCCc -3'
miRNA:   3'- gUCGCAgUCG--UCGcUUGGCG--------UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 130463 0.66 0.870871
Target:  5'- -cGCGUCGGCcGgGAcCCcCGCACCg -3'
miRNA:   3'- guCGCAGUCGuCgCUuGGcGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 130405 0.68 0.769683
Target:  5'- gAGCGcgcuggCGGCccuggagcgcgaGGUGGGCgGCGCGCCCc -3'
miRNA:   3'- gUCGCa-----GUCG------------UCGCUUGgCGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 130320 0.71 0.580071
Target:  5'- uGGCGgCGGC-GCGGGCCGCgGCGuCCCc -3'
miRNA:   3'- gUCGCaGUCGuCGCUUGGCG-UGU-GGG- -5'
31030 3' -56.9 NC_006560.1 + 130260 0.75 0.401145
Target:  5'- uGGCGUCG--AGCGAGCUGCAgGCCUu -3'
miRNA:   3'- gUCGCAGUcgUCGCUUGGCGUgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 129800 0.71 0.590176
Target:  5'- -cGCaUCGaccGCAGCGGcuGCCGCACGCaCCg -3'
miRNA:   3'- guCGcAGU---CGUCGCU--UGGCGUGUG-GG- -5'
31030 3' -56.9 NC_006560.1 + 129205 0.68 0.769683
Target:  5'- uCGGCGgccCGGUcgGGCGcAACCGCuuuacGCACCUg -3'
miRNA:   3'- -GUCGCa--GUCG--UCGC-UUGGCG-----UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 129076 0.75 0.401145
Target:  5'- -uGCG-CGGCGGCGAccccggcgugucGCUGCAgGCCCg -3'
miRNA:   3'- guCGCaGUCGUCGCU------------UGGCGUgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 128819 0.72 0.550002
Target:  5'- -cGCGUCGGC-GCGcGCCGaCGCGgCCg -3'
miRNA:   3'- guCGCAGUCGuCGCuUGGC-GUGUgGG- -5'
31030 3' -56.9 NC_006560.1 + 128735 0.67 0.80607
Target:  5'- --aCGUC-GUGGCGcccgcGGCCGCugGCCCg -3'
miRNA:   3'- gucGCAGuCGUCGC-----UUGGCGugUGGG- -5'
31030 3' -56.9 NC_006560.1 + 128687 0.66 0.885076
Target:  5'- gGGCGggGGCGcGCucgGAGCCGgucuuCACGCCCa -3'
miRNA:   3'- gUCGCagUCGU-CG---CUUGGC-----GUGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.