miRNA display CGI


Results 61 - 80 of 422 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31030 3' -56.9 NC_006560.1 + 127706 0.66 0.878082
Target:  5'- -uGCGUgA-CGGUGGuCCGCGCGCCg -3'
miRNA:   3'- guCGCAgUcGUCGCUuGGCGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 127649 0.68 0.797186
Target:  5'- gAGCGgcaGGcCAGCGGGCCGguCuuguuuCCCg -3'
miRNA:   3'- gUCGCag-UC-GUCGCUUGGCguGu-----GGG- -5'
31030 3' -56.9 NC_006560.1 + 127363 0.66 0.878082
Target:  5'- -cGCGUagaAGCAGgGAAagGC-CGCCCg -3'
miRNA:   3'- guCGCAg--UCGUCgCUUggCGuGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 127284 0.72 0.550002
Target:  5'- gGGCGUcCAGguGCGGggguGCgGCcACGCCCc -3'
miRNA:   3'- gUCGCA-GUCguCGCU----UGgCG-UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 127237 0.69 0.711646
Target:  5'- -cGCcagCAGCAGCGucGCCGUcacggcguagACGCCCa -3'
miRNA:   3'- guCGca-GUCGUCGCu-UGGCG----------UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 127186 0.78 0.25526
Target:  5'- cCGGCGgCGGUAGCGcGCCGUcgucGCGCCCa -3'
miRNA:   3'- -GUCGCaGUCGUCGCuUGGCG----UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 126634 0.69 0.691668
Target:  5'- gGGCG-UAGUAGCGcuccGCCGCcACGCCg -3'
miRNA:   3'- gUCGCaGUCGUCGCu---UGGCG-UGUGGg -5'
31030 3' -56.9 NC_006560.1 + 126517 0.73 0.491503
Target:  5'- aGGCGcgCAcGCAGCGGACCGCG-GCCa -3'
miRNA:   3'- gUCGCa-GU-CGUCGCUUGGCGUgUGGg -5'
31030 3' -56.9 NC_006560.1 + 126408 0.68 0.750727
Target:  5'- -cGCG-CGGCGcGCaugGAGCCGCGCGCgCg -3'
miRNA:   3'- guCGCaGUCGU-CG---CUUGGCGUGUGgG- -5'
31030 3' -56.9 NC_006560.1 + 125520 0.69 0.741089
Target:  5'- -cGCGcCGGCcGCGGugCGCGcCGCCg -3'
miRNA:   3'- guCGCaGUCGuCGCUugGCGU-GUGGg -5'
31030 3' -56.9 NC_006560.1 + 125444 0.69 0.700687
Target:  5'- uGGUGaccuucaUCgGGCGGC--ACCGCACGCCCg -3'
miRNA:   3'- gUCGC-------AG-UCGUCGcuUGGCGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 124745 0.69 0.711646
Target:  5'- -uGCGUCGGCGcacCGAcgACCGCgACGCCg -3'
miRNA:   3'- guCGCAGUCGUc--GCU--UGGCG-UGUGGg -5'
31030 3' -56.9 NC_006560.1 + 124134 0.67 0.80607
Target:  5'- aCGGCGUC-GCGGCGccggcgggggaGGCCGaGC-CCCg -3'
miRNA:   3'- -GUCGCAGuCGUCGC-----------UUGGCgUGuGGG- -5'
31030 3' -56.9 NC_006560.1 + 123971 0.67 0.814797
Target:  5'- gCGGCGcCgGGCcGCGAACCcCGCgACCCc -3'
miRNA:   3'- -GUCGCaG-UCGuCGCUUGGcGUG-UGGG- -5'
31030 3' -56.9 NC_006560.1 + 123198 0.67 0.831752
Target:  5'- -cGcCGUCucgcuGCGGCGGGCCGUccuCGCCg -3'
miRNA:   3'- guC-GCAGu----CGUCGCUUGGCGu--GUGGg -5'
31030 3' -56.9 NC_006560.1 + 123025 0.66 0.884387
Target:  5'- gGGCGcuacaUCGGCcagcuGGCGGGcCCGCgcggcgaGCACCCc -3'
miRNA:   3'- gUCGC-----AGUCG-----UCGCUU-GGCG-------UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 121887 0.71 0.619628
Target:  5'- uCGGCGUCc-CGGCGcGCCGCccucccgucccccGCGCCCc -3'
miRNA:   3'- -GUCGCAGucGUCGCuUGGCG-------------UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 121815 0.72 0.529241
Target:  5'- cCAGCuGcCGGCcgaacaucgcggaGGCGGGgCGCGCGCCCg -3'
miRNA:   3'- -GUCG-CaGUCG-------------UCGCUUgGCGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 121618 0.66 0.885076
Target:  5'- gGGCGUgcucgCAGCAaucGUGAAgCGUccccACGCCCg -3'
miRNA:   3'- gUCGCA-----GUCGU---CGCUUgGCG----UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 121456 0.71 0.590176
Target:  5'- cCGGCGcgCAcGCcGCGAACCGCAgGCgCg -3'
miRNA:   3'- -GUCGCa-GU-CGuCGCUUGGCGUgUGgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.