miRNA display CGI


Results 81 - 100 of 422 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31030 3' -56.9 NC_006560.1 + 120458 0.68 0.750727
Target:  5'- uGGUGcugcUCGGCuccacccGCGGGCCGCGCAUCg -3'
miRNA:   3'- gUCGC----AGUCGu------CGCUUGGCGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 120416 0.69 0.731357
Target:  5'- gCAGCcucCGGCAGCugcuguUCGCGCGCCCc -3'
miRNA:   3'- -GUCGca-GUCGUCGcuu---GGCGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 119620 0.68 0.769683
Target:  5'- gGGCcccgaCGGCGGCgGGGCCGCGCGCa- -3'
miRNA:   3'- gUCGca---GUCGUCG-CUUGGCGUGUGgg -5'
31030 3' -56.9 NC_006560.1 + 118709 0.68 0.750727
Target:  5'- uGGUGgCGGCcugcgccgaggaGGaCGAGCCGCACcCCCg -3'
miRNA:   3'- gUCGCaGUCG------------UC-GCUUGGCGUGuGGG- -5'
31030 3' -56.9 NC_006560.1 + 118649 0.67 0.839963
Target:  5'- uGGCGU--GgGGCG-GCCGCaACGCCCc -3'
miRNA:   3'- gUCGCAguCgUCGCuUGGCG-UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 118249 0.67 0.831752
Target:  5'- -cGCGcgGGC-GCGGACCGCcGCGCCg -3'
miRNA:   3'- guCGCagUCGuCGCUUGGCG-UGUGGg -5'
31030 3' -56.9 NC_006560.1 + 118200 0.7 0.671493
Target:  5'- -cGCG-CugguGCAGCGGGCCGUGCgggacgugGCCCg -3'
miRNA:   3'- guCGCaGu---CGUCGCUUGGCGUG--------UGGG- -5'
31030 3' -56.9 NC_006560.1 + 118142 0.68 0.778984
Target:  5'- gGGCGgacGCGGCGGACCGCgaggACGuCUCg -3'
miRNA:   3'- gUCGCaguCGUCGCUUGGCG----UGU-GGG- -5'
31030 3' -56.9 NC_006560.1 + 118033 0.69 0.700687
Target:  5'- gCGGCGgggcUCGGCGGgGGcgggcccggcgccGCCGCggGCGCCCc -3'
miRNA:   3'- -GUCGC----AGUCGUCgCU-------------UGGCG--UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 117994 0.75 0.392701
Target:  5'- gCGGCGcccgCGGCGGCGGccgagGCCGCggcGCACCUg -3'
miRNA:   3'- -GUCGCa---GUCGUCGCU-----UGGCG---UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 117560 0.73 0.46334
Target:  5'- aCGGCG--GGCGGCGccGCCGC-CGCCCg -3'
miRNA:   3'- -GUCGCagUCGUCGCu-UGGCGuGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 117367 0.68 0.750727
Target:  5'- -cGCGccCGGCGGCcgcccACaCGCGCGCCCg -3'
miRNA:   3'- guCGCa-GUCGUCGcu---UG-GCGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 117323 0.72 0.570003
Target:  5'- gAGgGUgAGCGGuCGGGcCCGCcGCGCCCg -3'
miRNA:   3'- gUCgCAgUCGUC-GCUU-GGCG-UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 117220 0.68 0.788155
Target:  5'- aCGGCGUCGG-GGCGGAUgaaGUugGCCUc -3'
miRNA:   3'- -GUCGCAGUCgUCGCUUGg--CGugUGGG- -5'
31030 3' -56.9 NC_006560.1 + 116658 0.67 0.814797
Target:  5'- -uGuCGUCGGCGGcCGAGCCcGUgaGgGCCCg -3'
miRNA:   3'- guC-GCAGUCGUC-GCUUGG-CG--UgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 115847 0.7 0.671493
Target:  5'- -cGCG-CAGCuGGgGGACgCGCugGCCCu -3'
miRNA:   3'- guCGCaGUCG-UCgCUUG-GCGugUGGG- -5'
31030 3' -56.9 NC_006560.1 + 115779 0.66 0.870871
Target:  5'- gGGCcgccgCAGgaCGGCGAGCgGCGCcuGCCCg -3'
miRNA:   3'- gUCGca---GUC--GUCGCUUGgCGUG--UGGG- -5'
31030 3' -56.9 NC_006560.1 + 115742 0.67 0.831752
Target:  5'- -cGCGggaGGCGGCGcAGCUGaucCACCCg -3'
miRNA:   3'- guCGCag-UCGUCGC-UUGGCgu-GUGGG- -5'
31030 3' -56.9 NC_006560.1 + 114047 0.68 0.769683
Target:  5'- aCGGCGgccguggccaCGGCGGCcGugCGCGCcCCCg -3'
miRNA:   3'- -GUCGCa---------GUCGUCGcUugGCGUGuGGG- -5'
31030 3' -56.9 NC_006560.1 + 113668 0.66 0.885076
Target:  5'- -uGCGggAGCuGGCccGGACCGCGC-CCCu -3'
miRNA:   3'- guCGCagUCG-UCG--CUUGGCGUGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.