miRNA display CGI


Results 101 - 120 of 422 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31030 3' -56.9 NC_006560.1 + 113376 0.66 0.863448
Target:  5'- -cGCGUCGucGCGGaCGGccCCGCGCugCUg -3'
miRNA:   3'- guCGCAGU--CGUC-GCUu-GGCGUGugGG- -5'
31030 3' -56.9 NC_006560.1 + 113097 0.66 0.862694
Target:  5'- -cGCGcCGccgacGCGGCGAAcgaccgcCCGCACcgGCCCg -3'
miRNA:   3'- guCGCaGU-----CGUCGCUU-------GGCGUG--UGGG- -5'
31030 3' -56.9 NC_006560.1 + 112624 0.68 0.788155
Target:  5'- gCGGCGauccaCGGgAGCGAGCaCGUguucuGCGCCCu -3'
miRNA:   3'- -GUCGCa----GUCgUCGCUUG-GCG-----UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 111182 0.67 0.822512
Target:  5'- -cGCGUaggcacgcaccgcCAGCuGCGGGCCauccagcaGCugGCCCg -3'
miRNA:   3'- guCGCA-------------GUCGuCGCUUGG--------CGugUGGG- -5'
31030 3' -56.9 NC_006560.1 + 110948 0.67 0.839963
Target:  5'- gGGCuGUCGGUGGCGugcguCUGCACcaaguuCCCg -3'
miRNA:   3'- gUCG-CAGUCGUCGCuu---GGCGUGu-----GGG- -5'
31030 3' -56.9 NC_006560.1 + 110554 0.67 0.831752
Target:  5'- gGGUGgggcCAGCGGgGuauauaAACCGCGCuCCCg -3'
miRNA:   3'- gUCGCa---GUCGUCgC------UUGGCGUGuGGG- -5'
31030 3' -56.9 NC_006560.1 + 110383 0.66 0.863448
Target:  5'- aGGCGcgccaGGCcGCaGAuccGCUGCGCGCCCa -3'
miRNA:   3'- gUCGCag---UCGuCG-CU---UGGCGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 109186 0.66 0.885076
Target:  5'- -cGCGUgGGCGGCaGACgGaguagaCGCACCCc -3'
miRNA:   3'- guCGCAgUCGUCGcUUGgC------GUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 108869 0.66 0.877371
Target:  5'- gAGgGUCuuguccuGGguGCGca-CGCGCACCCc -3'
miRNA:   3'- gUCgCAG-------UCguCGCuugGCGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 108631 0.67 0.823361
Target:  5'- cCGGCGaUgGGCcGCGccGAgCGCugGCCCg -3'
miRNA:   3'- -GUCGC-AgUCGuCGC--UUgGCGugUGGG- -5'
31030 3' -56.9 NC_006560.1 + 108515 0.66 0.855818
Target:  5'- gGGCGgcCGGCGGCGGGCCcggggGCGCGUCg -3'
miRNA:   3'- gUCGCa-GUCGUCGCUUGG-----CGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 108426 0.72 0.540082
Target:  5'- gUAGcCGUCGGCGG-GAgacGCCGCgcccaGCGCCCg -3'
miRNA:   3'- -GUC-GCAGUCGUCgCU---UGGCG-----UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 108311 0.7 0.648139
Target:  5'- gCGGgGUCAGCGcccGCGccgcacccagaaagGGCCGCgggGCACCCu -3'
miRNA:   3'- -GUCgCAGUCGU---CGC--------------UUGGCG---UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 108046 0.72 0.570003
Target:  5'- uCGGCGUCGGCGcGCGcgUCGCu--CCCg -3'
miRNA:   3'- -GUCGCAGUCGU-CGCuuGGCGuguGGG- -5'
31030 3' -56.9 NC_006560.1 + 107781 0.66 0.870871
Target:  5'- cCAGUacgCGGCGacccucguGCGggUCGuCGCGCCCa -3'
miRNA:   3'- -GUCGca-GUCGU--------CGCuuGGC-GUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 107327 0.66 0.847987
Target:  5'- -cGCaG-CAGCAGCuGGCCGgGgGCCCg -3'
miRNA:   3'- guCG-CaGUCGUCGcUUGGCgUgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 106521 0.67 0.814797
Target:  5'- aGGCGgCGGUGGCccccagcGCCGCgcGCACCCu -3'
miRNA:   3'- gUCGCaGUCGUCGcu-----UGGCG--UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 106375 0.7 0.681601
Target:  5'- -cGCG-CcGCuGUGGGCCGCGCGCgCCa -3'
miRNA:   3'- guCGCaGuCGuCGCUUGGCGUGUG-GG- -5'
31030 3' -56.9 NC_006560.1 + 105827 0.7 0.681601
Target:  5'- cUAGCGuUCGGguGCGAcGCCGCGCucguGCgCg -3'
miRNA:   3'- -GUCGC-AGUCguCGCU-UGGCGUG----UGgG- -5'
31030 3' -56.9 NC_006560.1 + 105267 0.67 0.80607
Target:  5'- cCGGCGg-AGCugaaccugacGGCGAccACCGCGC-CCCu -3'
miRNA:   3'- -GUCGCagUCG----------UCGCU--UGGCGUGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.