miRNA display CGI


Results 81 - 100 of 422 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31030 3' -56.9 NC_006560.1 + 99981 0.66 0.863448
Target:  5'- -cGCGUCGG-GGCcuGGGuCCGuCGCGCCCg -3'
miRNA:   3'- guCGCAGUCgUCG--CUU-GGC-GUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 66334 0.66 0.863448
Target:  5'- cCGGUGUgcgCGGCcucGUGGgggccGCCGCACACCg -3'
miRNA:   3'- -GUCGCA---GUCGu--CGCU-----UGGCGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 110383 0.66 0.863448
Target:  5'- aGGCGcgccaGGCcGCaGAuccGCUGCGCGCCCa -3'
miRNA:   3'- gUCGCag---UCGuCG-CU---UGGCGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 83228 0.66 0.863448
Target:  5'- aAGCG--GGCGGCGccccgggcGCCGCccuCGCCCg -3'
miRNA:   3'- gUCGCagUCGUCGCu-------UGGCGu--GUGGG- -5'
31030 3' -56.9 NC_006560.1 + 75053 0.66 0.863448
Target:  5'- aCAGCGccgcCGGCuacgagcgAGCGAcCCGgCugGCCCu -3'
miRNA:   3'- -GUCGCa---GUCG--------UCGCUuGGC-GugUGGG- -5'
31030 3' -56.9 NC_006560.1 + 68480 0.66 0.863448
Target:  5'- -uGCGUCgcggAGUGGaCGGACCGCugGCgguCCg -3'
miRNA:   3'- guCGCAG----UCGUC-GCUUGGCGugUG---GG- -5'
31030 3' -56.9 NC_006560.1 + 18030 0.66 0.863448
Target:  5'- -cGCGaCGGCuAGCGcGGCCGCcgGgACCCa -3'
miRNA:   3'- guCGCaGUCG-UCGC-UUGGCG--UgUGGG- -5'
31030 3' -56.9 NC_006560.1 + 81360 0.66 0.870871
Target:  5'- cCGGCGgccacCAGCAGCGcgggcggaacGGcCCGCuGCugCCg -3'
miRNA:   3'- -GUCGCa----GUCGUCGC----------UU-GGCG-UGugGG- -5'
31030 3' -56.9 NC_006560.1 + 98443 0.66 0.870871
Target:  5'- uGGCGggCGGCGGCGAggACgGCGCGg-- -3'
miRNA:   3'- gUCGCa-GUCGUCGCU--UGgCGUGUggg -5'
31030 3' -56.9 NC_006560.1 + 4463 0.66 0.870871
Target:  5'- gUAGCGcCGGC-GCGccuCCGC-CACCUc -3'
miRNA:   3'- -GUCGCaGUCGuCGCuu-GGCGuGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 77882 0.66 0.877371
Target:  5'- gGGCGauccuguUCGuGCAGCGccuGACCccccacGCGCGCCCc -3'
miRNA:   3'- gUCGC-------AGU-CGUCGC---UUGG------CGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 87876 0.66 0.873781
Target:  5'- gGGCG-CGGguGgGGgggcgcgccgucccgGCCGCGC-CCCa -3'
miRNA:   3'- gUCGCaGUCguCgCU---------------UGGCGUGuGGG- -5'
31030 3' -56.9 NC_006560.1 + 130463 0.66 0.870871
Target:  5'- -cGCGUCGGCcGgGAcCCcCGCACCg -3'
miRNA:   3'- guCGCAGUCGuCgCUuGGcGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 115779 0.66 0.870871
Target:  5'- gGGCcgccgCAGgaCGGCGAGCgGCGCcuGCCCg -3'
miRNA:   3'- gUCGca---GUC--GUCGCUUGgCGUG--UGGG- -5'
31030 3' -56.9 NC_006560.1 + 107781 0.66 0.870871
Target:  5'- cCAGUacgCGGCGacccucguGCGggUCGuCGCGCCCa -3'
miRNA:   3'- -GUCGca-GUCGU--------CGCuuGGC-GUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 76601 0.66 0.870871
Target:  5'- -cGCGcUCGGCgaGGCGuGCCGCcggacgacCGCCCu -3'
miRNA:   3'- guCGC-AGUCG--UCGCuUGGCGu-------GUGGG- -5'
31030 3' -56.9 NC_006560.1 + 66563 0.66 0.870871
Target:  5'- uGGCGUC-GUAcGcCGGGgCGCACGCCg -3'
miRNA:   3'- gUCGCAGuCGU-C-GCUUgGCGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 46001 0.66 0.870871
Target:  5'- cCGGcCGUCGGgGGCGcgugcaccACCGCGCAgaagUCCg -3'
miRNA:   3'- -GUC-GCAGUCgUCGCu-------UGGCGUGU----GGG- -5'
31030 3' -56.9 NC_006560.1 + 34729 0.66 0.870871
Target:  5'- gGGgGUCGcucgccGCGGCGGcCCGCGCgucGCCUc -3'
miRNA:   3'- gUCgCAGU------CGUCGCUuGGCGUG---UGGG- -5'
31030 3' -56.9 NC_006560.1 + 18341 0.66 0.870871
Target:  5'- -cGCGgccgaccuGCGGCGcguGGCCGCGC-CCCu -3'
miRNA:   3'- guCGCagu-----CGUCGC---UUGGCGUGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.