miRNA display CGI


Results 21 - 40 of 422 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31030 3' -56.9 NC_006560.1 + 43671 0.66 0.878082
Target:  5'- gAGCGUggucaGGCcgcgcugcccgAGCGGGgCGCGCGCCa -3'
miRNA:   3'- gUCGCAg----UCG-----------UCGCUUgGCGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 127363 0.66 0.878082
Target:  5'- -cGCGUagaAGCAGgGAAagGC-CGCCCg -3'
miRNA:   3'- guCGCAg--UCGUCgCUUggCGuGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 127706 0.66 0.878082
Target:  5'- -uGCGUgA-CGGUGGuCCGCGCGCCg -3'
miRNA:   3'- guCGCAgUcGUCGCUuGGCGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 139052 0.66 0.878082
Target:  5'- gCGGUGUCccGGCccguGcCGGGCCcggggGCGCGCCCu -3'
miRNA:   3'- -GUCGCAG--UCGu---C-GCUUGG-----CGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 23778 0.66 0.878082
Target:  5'- cCGGCG-CcGCcGCGccGCUGCugGCCCg -3'
miRNA:   3'- -GUCGCaGuCGuCGCu-UGGCGugUGGG- -5'
31030 3' -56.9 NC_006560.1 + 108869 0.66 0.877371
Target:  5'- gAGgGUCuuguccuGGguGCGca-CGCGCACCCc -3'
miRNA:   3'- gUCgCAG-------UCguCGCuugGCGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 77882 0.66 0.877371
Target:  5'- gGGCGauccuguUCGuGCAGCGccuGACCccccacGCGCGCCCc -3'
miRNA:   3'- gUCGC-------AGU-CGUCGC---UUGG------CGUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 87876 0.66 0.873781
Target:  5'- gGGCG-CGGguGgGGgggcgcgccgucccgGCCGCGC-CCCa -3'
miRNA:   3'- gUCGCaGUCguCgCU---------------UGGCGUGuGGG- -5'
31030 3' -56.9 NC_006560.1 + 28419 0.66 0.870871
Target:  5'- gGGCGggCcGgGGCGGGCCGagggggagGCGCCCg -3'
miRNA:   3'- gUCGCa-GuCgUCGCUUGGCg-------UGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 81360 0.66 0.870871
Target:  5'- cCGGCGgccacCAGCAGCGcgggcggaacGGcCCGCuGCugCCg -3'
miRNA:   3'- -GUCGCa----GUCGUCGC----------UU-GGCG-UGugGG- -5'
31030 3' -56.9 NC_006560.1 + 98443 0.66 0.870871
Target:  5'- uGGCGggCGGCGGCGAggACgGCGCGg-- -3'
miRNA:   3'- gUCGCa-GUCGUCGCU--UGgCGUGUggg -5'
31030 3' -56.9 NC_006560.1 + 4463 0.66 0.870871
Target:  5'- gUAGCGcCGGC-GCGccuCCGC-CACCUc -3'
miRNA:   3'- -GUCGCaGUCGuCGCuu-GGCGuGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 18341 0.66 0.870871
Target:  5'- -cGCGgccgaccuGCGGCGcguGGCCGCGC-CCCu -3'
miRNA:   3'- guCGCagu-----CGUCGC---UUGGCGUGuGGG- -5'
31030 3' -56.9 NC_006560.1 + 34729 0.66 0.870871
Target:  5'- gGGgGUCGcucgccGCGGCGGcCCGCGCgucGCCUc -3'
miRNA:   3'- gUCgCAGU------CGUCGCUuGGCGUG---UGGG- -5'
31030 3' -56.9 NC_006560.1 + 46001 0.66 0.870871
Target:  5'- cCGGcCGUCGGgGGCGcgugcaccACCGCGCAgaagUCCg -3'
miRNA:   3'- -GUC-GCAGUCgUCGCu-------UGGCGUGU----GGG- -5'
31030 3' -56.9 NC_006560.1 + 66563 0.66 0.870871
Target:  5'- uGGCGUC-GUAcGcCGGGgCGCACGCCg -3'
miRNA:   3'- gUCGCAGuCGU-C-GCUUgGCGUGUGGg -5'
31030 3' -56.9 NC_006560.1 + 76601 0.66 0.870871
Target:  5'- -cGCGcUCGGCgaGGCGuGCCGCcggacgacCGCCCu -3'
miRNA:   3'- guCGC-AGUCG--UCGCuUGGCGu-------GUGGG- -5'
31030 3' -56.9 NC_006560.1 + 107781 0.66 0.870871
Target:  5'- cCAGUacgCGGCGacccucguGCGggUCGuCGCGCCCa -3'
miRNA:   3'- -GUCGca-GUCGU--------CGCuuGGC-GUGUGGG- -5'
31030 3' -56.9 NC_006560.1 + 115779 0.66 0.870871
Target:  5'- gGGCcgccgCAGgaCGGCGAGCgGCGCcuGCCCg -3'
miRNA:   3'- gUCGca---GUC--GUCGCUUGgCGUG--UGGG- -5'
31030 3' -56.9 NC_006560.1 + 130463 0.66 0.870871
Target:  5'- -cGCGUCGGCcGgGAcCCcCGCACCg -3'
miRNA:   3'- guCGCAGUCGuCgCUuGGcGUGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.