miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31030 5' -54.8 NC_006560.1 + 69759 0.67 0.902687
Target:  5'- ----cUUCCCGGcgcucgacggcGUCcCCCCCGCCGu -3'
miRNA:   3'- cauuuGAGGGCU-----------UAGaGGGGGCGGUc -5'
31030 5' -54.8 NC_006560.1 + 134018 0.67 0.896201
Target:  5'- ---uGCUCgCG-GUCgagcgcCCCCCGCCGGg -3'
miRNA:   3'- cauuUGAGgGCuUAGa-----GGGGGCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 143111 0.68 0.88253
Target:  5'- ------cCCCGGAgccCcCCCCCGCCGGu -3'
miRNA:   3'- cauuugaGGGCUUa--GaGGGGGCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 11516 0.68 0.88253
Target:  5'- -gAGGCgcucgucgCCCGA----CCCCCGCCGGg -3'
miRNA:   3'- caUUUGa-------GGGCUuagaGGGGGCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 26443 0.68 0.875353
Target:  5'- -gGGGCUgCCGGG-CUCCCcuaggccuccaCCGCCGGg -3'
miRNA:   3'- caUUUGAgGGCUUaGAGGG-----------GGCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 73506 0.68 0.875353
Target:  5'- -cGGGCcggCCCGGAcacccUCUucgCCCCCGCCAc -3'
miRNA:   3'- caUUUGa--GGGCUU-----AGA---GGGGGCGGUc -5'
31030 5' -54.8 NC_006560.1 + 136160 0.68 0.875353
Target:  5'- -gGGGCUCCUGggUCgCCaCCUGCUg- -3'
miRNA:   3'- caUUUGAGGGCuuAGaGG-GGGCGGuc -5'
31030 5' -54.8 NC_006560.1 + 148890 0.68 0.867954
Target:  5'- -gGGAuCUUCCGGG-CUCuCCCCGCUGGg -3'
miRNA:   3'- caUUU-GAGGGCUUaGAG-GGGGCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 79275 0.68 0.867954
Target:  5'- -cGAACUCCCGGcgacgaCUCCgggucgCCGCCGGg -3'
miRNA:   3'- caUUUGAGGGCUua----GAGGg-----GGCGGUC- -5'
31030 5' -54.8 NC_006560.1 + 64787 0.68 0.867954
Target:  5'- ---cGCggCCCGGcgcuccgCUCCCCCGCCu- -3'
miRNA:   3'- cauuUGa-GGGCUua-----GAGGGGGCGGuc -5'
31030 5' -54.8 NC_006560.1 + 63216 0.68 0.844487
Target:  5'- uUGAGCUCCCGGAaCUCCUCggagGCgAGg -3'
miRNA:   3'- cAUUUGAGGGCUUaGAGGGGg---CGgUC- -5'
31030 5' -54.8 NC_006560.1 + 80463 0.69 0.836262
Target:  5'- -cGGGCUCCCacuUCggaCCCCCGCCc- -3'
miRNA:   3'- caUUUGAGGGcuuAGa--GGGGGCGGuc -5'
31030 5' -54.8 NC_006560.1 + 72686 0.69 0.827848
Target:  5'- cGUcGAC-CCCGAcgCcggCCCCCGCCc- -3'
miRNA:   3'- -CAuUUGaGGGCUuaGa--GGGGGCGGuc -5'
31030 5' -54.8 NC_006560.1 + 148087 0.69 0.827848
Target:  5'- -gGAGCUCCUcguccaGGAgggCgUCCCCCGCCGc -3'
miRNA:   3'- caUUUGAGGG------CUUa--G-AGGGGGCGGUc -5'
31030 5' -54.8 NC_006560.1 + 15374 0.69 0.819253
Target:  5'- -gGGACUCCCccccgcCUCCUCCGCCu- -3'
miRNA:   3'- caUUUGAGGGcuua--GAGGGGGCGGuc -5'
31030 5' -54.8 NC_006560.1 + 36599 0.69 0.805144
Target:  5'- uGUGAGCcgCUCGGAUCUgcgucugcccgcgucCCCCCggcGCCAGg -3'
miRNA:   3'- -CAUUUGa-GGGCUUAGA---------------GGGGG---CGGUC- -5'
31030 5' -54.8 NC_006560.1 + 47988 0.69 0.801552
Target:  5'- ----cCUCCCGucUCgccgCCCCCGCCc- -3'
miRNA:   3'- cauuuGAGGGCuuAGa---GGGGGCGGuc -5'
31030 5' -54.8 NC_006560.1 + 38214 0.69 0.801552
Target:  5'- -cGGGCgCCCG--UCUCCCCCcgccGCCGGg -3'
miRNA:   3'- caUUUGaGGGCuuAGAGGGGG----CGGUC- -5'
31030 5' -54.8 NC_006560.1 + 49197 0.7 0.792462
Target:  5'- --cGAC-CCCGAcgCcCCCCCGCCc- -3'
miRNA:   3'- cauUUGaGGGCUuaGaGGGGGCGGuc -5'
31030 5' -54.8 NC_006560.1 + 143481 0.7 0.792462
Target:  5'- aGUGGGCgggcgCCCGGcg-UCCCCCGCCc- -3'
miRNA:   3'- -CAUUUGa----GGGCUuagAGGGGGCGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.