miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31031 3' -59.1 NC_006560.1 + 146525 0.66 0.797492
Target:  5'- gCGGGccggCGCGucg-GGGGGCGCGGGc- -3'
miRNA:   3'- -GCCCa---GCGCucugCCCCUGCGUCUuc -5'
31031 3' -59.1 NC_006560.1 + 146847 0.66 0.797492
Target:  5'- gCGGcGgCGCGGGGCGGGGcgGCGCc---- -3'
miRNA:   3'- -GCC-CaGCGCUCUGCCCC--UGCGucuuc -5'
31031 3' -59.1 NC_006560.1 + 13252 0.66 0.797492
Target:  5'- -aGGUUGCG-GACGGGGcacuCGCccAGggGc -3'
miRNA:   3'- gcCCAGCGCuCUGCCCCu---GCG--UCuuC- -5'
31031 3' -59.1 NC_006560.1 + 32837 0.66 0.788715
Target:  5'- aGGGccaCGCG-GGCGGcGGGCagccccccggGCAGAGGg -3'
miRNA:   3'- gCCCa--GCGCuCUGCC-CCUG----------CGUCUUC- -5'
31031 3' -59.1 NC_006560.1 + 150208 0.66 0.788715
Target:  5'- aGGGUgGCGAGcGCGcGGACGCuGccGg -3'
miRNA:   3'- gCCCAgCGCUC-UGCcCCUGCGuCuuC- -5'
31031 3' -59.1 NC_006560.1 + 2131 0.66 0.788715
Target:  5'- gGGGUC-CGgcucGGGCaGGGcgcgcGCGCAGAAGg -3'
miRNA:   3'- gCCCAGcGC----UCUGcCCC-----UGCGUCUUC- -5'
31031 3' -59.1 NC_006560.1 + 5484 0.66 0.788715
Target:  5'- gCGcGGUCGCGGcgagggucGGCGGcGGuCGCGGcGAGg -3'
miRNA:   3'- -GC-CCAGCGCU--------CUGCC-CCuGCGUC-UUC- -5'
31031 3' -59.1 NC_006560.1 + 11543 0.66 0.788715
Target:  5'- gGGGUCGCGGGGuCGGGGGu------- -3'
miRNA:   3'- gCCCAGCGCUCU-GCCCCUgcgucuuc -5'
31031 3' -59.1 NC_006560.1 + 34353 0.66 0.788715
Target:  5'- cCGGGUUGgGgaGGAgGGGGGCGCc---- -3'
miRNA:   3'- -GCCCAGCgC--UCUgCCCCUGCGucuuc -5'
31031 3' -59.1 NC_006560.1 + 139688 0.66 0.788715
Target:  5'- aCGGGUgaGCGuAGgugaggacGCGGuGGACGCGGGGu -3'
miRNA:   3'- -GCCCAg-CGC-UC--------UGCC-CCUGCGUCUUc -5'
31031 3' -59.1 NC_006560.1 + 4783 0.66 0.788715
Target:  5'- cCGGGUC-CGAGuCGGGGuCGgGGuccGAGu -3'
miRNA:   3'- -GCCCAGcGCUCuGCCCCuGCgUC---UUC- -5'
31031 3' -59.1 NC_006560.1 + 15053 0.66 0.788715
Target:  5'- cCGGGggGCGAcggcgucgGugGGGGGCGgGGGc- -3'
miRNA:   3'- -GCCCagCGCU--------CugCCCCUGCgUCUuc -5'
31031 3' -59.1 NC_006560.1 + 82740 0.66 0.788715
Target:  5'- cCGGGcCcCGGGACGGcGGACG-AGGAc -3'
miRNA:   3'- -GCCCaGcGCUCUGCC-CCUGCgUCUUc -5'
31031 3' -59.1 NC_006560.1 + 69446 0.67 0.779806
Target:  5'- gCGaGGcCGCGGGGCuggcgGGGGGCGUccuGAGGc -3'
miRNA:   3'- -GC-CCaGCGCUCUG-----CCCCUGCGu--CUUC- -5'
31031 3' -59.1 NC_006560.1 + 26088 0.67 0.770773
Target:  5'- cCGGGcggcccgGCGcGGCGGGGGCuucGCGGggGc -3'
miRNA:   3'- -GCCCag-----CGCuCUGCCCCUG---CGUCuuC- -5'
31031 3' -59.1 NC_006560.1 + 32899 0.67 0.769863
Target:  5'- gGGGgcgcgccCGCGGGGuagccgcCGGGGGCcgaggGCAGggGg -3'
miRNA:   3'- gCCCa------GCGCUCU-------GCCCCUG-----CGUCuuC- -5'
31031 3' -59.1 NC_006560.1 + 70494 0.67 0.761625
Target:  5'- gGGGUCuGCGAcGCGcuGGcGACGCAGGu- -3'
miRNA:   3'- gCCCAG-CGCUcUGC--CC-CUGCGUCUuc -5'
31031 3' -59.1 NC_006560.1 + 39952 0.67 0.761625
Target:  5'- -cGGUagGCGGGGCGGcGGCGCGGgcGg -3'
miRNA:   3'- gcCCAg-CGCUCUGCCcCUGCGUCuuC- -5'
31031 3' -59.1 NC_006560.1 + 3658 0.67 0.761625
Target:  5'- uCGGcGcCGC----CGGGGACGCGGAGGu -3'
miRNA:   3'- -GCC-CaGCGcucuGCCCCUGCGUCUUC- -5'
31031 3' -59.1 NC_006560.1 + 101762 0.67 0.761625
Target:  5'- gCGGccgcGUCGCGGGGCacgucgccGGGGGCgGCGGcAGGa -3'
miRNA:   3'- -GCC----CAGCGCUCUG--------CCCCUG-CGUC-UUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.