miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31031 5' -58.7 NC_006560.1 + 139 0.69 0.611299
Target:  5'- ------cGGGGccgGCCCCGCC-CCGCGg -3'
miRNA:   3'- uagaagaCCUCa--UGGGGCGGaGGCGC- -5'
31031 5' -58.7 NC_006560.1 + 423 0.74 0.331824
Target:  5'- ---cUgUGGGGUuCCCCgGCCUCCGCGg -3'
miRNA:   3'- uagaAgACCUCAuGGGG-CGGAGGCGC- -5'
31031 5' -58.7 NC_006560.1 + 11563 0.66 0.769292
Target:  5'- cUCUUC-GGucu-CCCCGaCCUCCGCc -3'
miRNA:   3'- uAGAAGaCCucauGGGGC-GGAGGCGc -5'
31031 5' -58.7 NC_006560.1 + 18856 0.68 0.691867
Target:  5'- cGUCUcgccUCUGGGcGgggccgccGCCCCGCCcgCCGUGg -3'
miRNA:   3'- -UAGA----AGACCU-Ca-------UGGGGCGGa-GGCGC- -5'
31031 5' -58.7 NC_006560.1 + 23198 0.68 0.67185
Target:  5'- uUCggCUGGGGccugGCCCaCGCCgCCGCc -3'
miRNA:   3'- uAGaaGACCUCa---UGGG-GCGGaGGCGc -5'
31031 5' -58.7 NC_006560.1 + 26122 0.69 0.631502
Target:  5'- -gCUUCgcGGGG-GCCCCGCCggggCUGCGu -3'
miRNA:   3'- uaGAAGa-CCUCaUGGGGCGGa---GGCGC- -5'
31031 5' -58.7 NC_006560.1 + 28556 0.69 0.611299
Target:  5'- ----cCUGGGGgccGCCCCGCg-CCGCGg -3'
miRNA:   3'- uagaaGACCUCa--UGGGGCGgaGGCGC- -5'
31031 5' -58.7 NC_006560.1 + 30097 0.67 0.740908
Target:  5'- ------gGGAGgcgGCCCCgGCCUCCGUc -3'
miRNA:   3'- uagaagaCCUCa--UGGGG-CGGAGGCGc -5'
31031 5' -58.7 NC_006560.1 + 40135 0.67 0.721507
Target:  5'- cAUCUgcaUGcGGaGCCCCGCC-CCGCGu -3'
miRNA:   3'- -UAGAag-ACcUCaUGGGGCGGaGGCGC- -5'
31031 5' -58.7 NC_006560.1 + 42019 0.69 0.589148
Target:  5'- gAUCUUCUGGgcgcacgugcaccgcGGUgACUCCggaggggcggaggcgGCCUCCGCGg -3'
miRNA:   3'- -UAGAAGACC---------------UCA-UGGGG---------------CGGAGGCGC- -5'
31031 5' -58.7 NC_006560.1 + 48865 0.71 0.521902
Target:  5'- cAUCagcgUCcGGGGgGCgCCCGUCUCCGCGg -3'
miRNA:   3'- -UAGa---AGaCCUCaUG-GGGCGGAGGCGC- -5'
31031 5' -58.7 NC_006560.1 + 51593 0.66 0.80543
Target:  5'- ----gCUGGccUGCCUCGCCgCCGCGg -3'
miRNA:   3'- uagaaGACCucAUGGGGCGGaGGCGC- -5'
31031 5' -58.7 NC_006560.1 + 71812 0.68 0.681879
Target:  5'- -cCUgCUGGAgacccaGUGCCCCGCCcacgacuucUUCGCGg -3'
miRNA:   3'- uaGAaGACCU------CAUGGGGCGG---------AGGCGC- -5'
31031 5' -58.7 NC_006560.1 + 76523 0.69 0.631502
Target:  5'- cGUCUUC-GGGGcGCaCCCGCUgaccgCCGCGc -3'
miRNA:   3'- -UAGAAGaCCUCaUG-GGGCGGa----GGCGC- -5'
31031 5' -58.7 NC_006560.1 + 79576 0.68 0.67185
Target:  5'- ------cGGAGccgcGCCCCGCC-CCGCGg -3'
miRNA:   3'- uagaagaCCUCa---UGGGGCGGaGGCGC- -5'
31031 5' -58.7 NC_006560.1 + 83596 0.82 0.113411
Target:  5'- cGUCUg--GGAGccgggGCCCCGCCUCCGCGc -3'
miRNA:   3'- -UAGAagaCCUCa----UGGGGCGGAGGCGC- -5'
31031 5' -58.7 NC_006560.1 + 103002 1.06 0.002498
Target:  5'- gAUCUUCUGGAGUACCCCGCCUCCGCGc -3'
miRNA:   3'- -UAGAAGACCUCAUGGGGCGGAGGCGC- -5'
31031 5' -58.7 NC_006560.1 + 104978 0.72 0.420432
Target:  5'- cGUCUUCccGGAGaUGCCCCGgCC-CCGCu -3'
miRNA:   3'- -UAGAAGa-CCUC-AUGGGGC-GGaGGCGc -5'
31031 5' -58.7 NC_006560.1 + 106150 0.68 0.691867
Target:  5'- gAUCUUCggGGAGgggGCCCCGaCCgagCC-CGg -3'
miRNA:   3'- -UAGAAGa-CCUCa--UGGGGC-GGa--GGcGC- -5'
31031 5' -58.7 NC_006560.1 + 107466 0.68 0.691867
Target:  5'- cGUCggCccgGGGGcGCUcgCCGCCUCCGCGc -3'
miRNA:   3'- -UAGaaGa--CCUCaUGG--GGCGGAGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.