miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31031 5' -58.7 NC_006560.1 + 28556 0.69 0.611299
Target:  5'- ----cCUGGGGgccGCCCCGCg-CCGCGg -3'
miRNA:   3'- uagaaGACCUCa--UGGGGCGgaGGCGC- -5'
31031 5' -58.7 NC_006560.1 + 42019 0.69 0.589148
Target:  5'- gAUCUUCUGGgcgcacgugcaccgcGGUgACUCCggaggggcggaggcgGCCUCCGCGg -3'
miRNA:   3'- -UAGAAGACC---------------UCA-UGGGG---------------CGGAGGCGC- -5'
31031 5' -58.7 NC_006560.1 + 134220 0.7 0.581125
Target:  5'- ------cGGGGUcgGCCCCGCCcgCCGCGc -3'
miRNA:   3'- uagaagaCCUCA--UGGGGCGGa-GGCGC- -5'
31031 5' -58.7 NC_006560.1 + 48865 0.71 0.521902
Target:  5'- cAUCagcgUCcGGGGgGCgCCCGUCUCCGCGg -3'
miRNA:   3'- -UAGa---AGaCCUCaUG-GGGCGGAGGCGC- -5'
31031 5' -58.7 NC_006560.1 + 128974 0.71 0.483738
Target:  5'- -gCUUCUGGGGccacgacggcGCCCCGUCcCCGCGc -3'
miRNA:   3'- uaGAAGACCUCa---------UGGGGCGGaGGCGC- -5'
31031 5' -58.7 NC_006560.1 + 104978 0.72 0.420432
Target:  5'- cGUCUUCccGGAGaUGCCCCGgCC-CCGCu -3'
miRNA:   3'- -UAGAAGa-CCUC-AUGGGGC-GGaGGCGc -5'
31031 5' -58.7 NC_006560.1 + 129245 0.73 0.386579
Target:  5'- -gCUgCUGGAGg--CCUGCCUCCGCGu -3'
miRNA:   3'- uaGAaGACCUCaugGGGCGGAGGCGC- -5'
31031 5' -58.7 NC_006560.1 + 423 0.74 0.331824
Target:  5'- ---cUgUGGGGUuCCCCgGCCUCCGCGg -3'
miRNA:   3'- uagaAgACCUCAuGGGG-CGGAGGCGC- -5'
31031 5' -58.7 NC_006560.1 + 125499 0.78 0.207649
Target:  5'- ----cCUGGGGgacgcCCCCGCCUCCGCGc -3'
miRNA:   3'- uagaaGACCUCau---GGGGCGGAGGCGC- -5'
31031 5' -58.7 NC_006560.1 + 131468 0.81 0.125721
Target:  5'- ------aGGAGUGCCCCGCCUUCGCGc -3'
miRNA:   3'- uagaagaCCUCAUGGGGCGGAGGCGC- -5'
31031 5' -58.7 NC_006560.1 + 83596 0.82 0.113411
Target:  5'- cGUCUg--GGAGccgggGCCCCGCCUCCGCGc -3'
miRNA:   3'- -UAGAagaCCUCa----UGGGGCGGAGGCGC- -5'
31031 5' -58.7 NC_006560.1 + 103002 1.06 0.002498
Target:  5'- gAUCUUCUGGAGUACCCCGCCUCCGCGc -3'
miRNA:   3'- -UAGAAGACCUCAUGGGGCGGAGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.