miRNA display CGI


Results 1 - 20 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31032 3' -55.3 NC_006560.1 + 111329 0.66 0.937977
Target:  5'- ----aUGCAGCGcuACcugGACaACGGGCGCCu -3'
miRNA:   3'- ugcugACGUCGC--UG---UUG-UGCUCGCGG- -5'
31032 3' -55.3 NC_006560.1 + 142676 0.66 0.937977
Target:  5'- gUGAgggGCGGCGGCGGaccggaGgGGGCGCCc -3'
miRNA:   3'- uGCUga-CGUCGCUGUUg-----UgCUCGCGG- -5'
31032 3' -55.3 NC_006560.1 + 150186 0.66 0.937977
Target:  5'- -aGACcGaCGGCGGCcgagagugaggGugGCGAGCGCg -3'
miRNA:   3'- ugCUGaC-GUCGCUG-----------UugUGCUCGCGg -5'
31032 3' -55.3 NC_006560.1 + 65367 0.66 0.937977
Target:  5'- gGCGGCgGCGGCGAaAACGCGgaacucggacauGGCGg- -3'
miRNA:   3'- -UGCUGaCGUCGCUgUUGUGC------------UCGCgg -5'
31032 3' -55.3 NC_006560.1 + 80816 0.66 0.937977
Target:  5'- -gGGCUGCGG-GGCGggGCGCGcccggaaccGCGCCu -3'
miRNA:   3'- ugCUGACGUCgCUGU--UGUGCu--------CGCGG- -5'
31032 3' -55.3 NC_006560.1 + 120492 0.66 0.937977
Target:  5'- cGCGGCccaccUGCAcgagguggucgcGgGGCAGCG-GGGCGCCg -3'
miRNA:   3'- -UGCUG-----ACGU------------CgCUGUUGUgCUCGCGG- -5'
31032 3' -55.3 NC_006560.1 + 121941 0.66 0.937977
Target:  5'- -gGGCccggGCGcGCGGCucuGCGCcGGCGCCu -3'
miRNA:   3'- ugCUGa---CGU-CGCUGu--UGUGcUCGCGG- -5'
31032 3' -55.3 NC_006560.1 + 17656 0.66 0.937977
Target:  5'- cCGGCagagGCgGGCGGCcuCGuccCGGGCGCCg -3'
miRNA:   3'- uGCUGa---CG-UCGCUGuuGU---GCUCGCGG- -5'
31032 3' -55.3 NC_006560.1 + 25220 0.66 0.937977
Target:  5'- cGCG-CUGC-GCGcCuucuGCGCGcGCGCCc -3'
miRNA:   3'- -UGCuGACGuCGCuGu---UGUGCuCGCGG- -5'
31032 3' -55.3 NC_006560.1 + 31848 0.66 0.937977
Target:  5'- cGCGACgcGCGGgGGggcCGAgGgGGGCGCCc -3'
miRNA:   3'- -UGCUGa-CGUCgCU---GUUgUgCUCGCGG- -5'
31032 3' -55.3 NC_006560.1 + 78137 0.66 0.937977
Target:  5'- uCGGCcGCAuGUGcCuGC-CGAGCGCCg -3'
miRNA:   3'- uGCUGaCGU-CGCuGuUGuGCUCGCGG- -5'
31032 3' -55.3 NC_006560.1 + 98532 0.66 0.935045
Target:  5'- uCGGCcaUGgAGCGcaccgagcACAaggcccgcaagaaggGCACGAGCGCCc -3'
miRNA:   3'- uGCUG--ACgUCGC--------UGU---------------UGUGCUCGCGG- -5'
31032 3' -55.3 NC_006560.1 + 142096 0.66 0.935045
Target:  5'- cGCGGCgcggaggauucccgGCAGCGAgccgggcguaaaCAAgGcCGAGCGCUc -3'
miRNA:   3'- -UGCUGa-------------CGUCGCU------------GUUgU-GCUCGCGG- -5'
31032 3' -55.3 NC_006560.1 + 43419 0.66 0.933042
Target:  5'- cGCGGCgccggggGCgucGGCGcGCGGCACGuGCGgCa -3'
miRNA:   3'- -UGCUGa------CG---UCGC-UGUUGUGCuCGCgG- -5'
31032 3' -55.3 NC_006560.1 + 77585 0.66 0.933042
Target:  5'- cGCGACU-CGGUGGC--CGCGGcCGCCg -3'
miRNA:   3'- -UGCUGAcGUCGCUGuuGUGCUcGCGG- -5'
31032 3' -55.3 NC_006560.1 + 92809 0.66 0.933042
Target:  5'- cACGcccaGCUGCAGauCGAgGACugGcuGGCGCUc -3'
miRNA:   3'- -UGC----UGACGUC--GCUgUUGugC--UCGCGG- -5'
31032 3' -55.3 NC_006560.1 + 99208 0.66 0.933042
Target:  5'- cGCGACggaAGCGACcGCGgCGGGCugcgGCCc -3'
miRNA:   3'- -UGCUGacgUCGCUGuUGU-GCUCG----CGG- -5'
31032 3' -55.3 NC_006560.1 + 99889 0.66 0.933042
Target:  5'- gUGGCgGCGGCgGGCGGCGCGGGguucaUGUCg -3'
miRNA:   3'- uGCUGaCGUCG-CUGUUGUGCUC-----GCGG- -5'
31032 3' -55.3 NC_006560.1 + 106734 0.66 0.933042
Target:  5'- cCGACgugGCGGUGGCcACccacgccgaccuGCGGGaCGCCc -3'
miRNA:   3'- uGCUGa--CGUCGCUGuUG------------UGCUC-GCGG- -5'
31032 3' -55.3 NC_006560.1 + 26688 0.66 0.933042
Target:  5'- -gGACgggGCccGCGACGAgcccgcgcCGCGGGCGCg -3'
miRNA:   3'- ugCUGa--CGu-CGCUGUU--------GUGCUCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.