miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31032 5' -57.8 NC_006560.1 + 57667 0.66 0.865184
Target:  5'- cGGGCGgcgaggcGCGCCCGccgCGCGuGGGUgGg -3'
miRNA:   3'- aCCUGUa------CGCGGGCa--GCGCcUUCAgC- -5'
31032 5' -57.8 NC_006560.1 + 131496 0.66 0.865184
Target:  5'- -cGACG-GCG-UCGUCGCGGccGUCGg -3'
miRNA:   3'- acCUGUaCGCgGGCAGCGCCuuCAGC- -5'
31032 5' -57.8 NC_006560.1 + 1627 0.66 0.865184
Target:  5'- cGGGCuucGCGCCUGUCuGUGGcgGGGcCGg -3'
miRNA:   3'- aCCUGua-CGCGGGCAG-CGCC--UUCaGC- -5'
31032 5' -57.8 NC_006560.1 + 105875 0.66 0.865184
Target:  5'- cGGuuCAUGgGCCUGUCGCu---GUCGa -3'
miRNA:   3'- aCCu-GUACgCGGGCAGCGccuuCAGC- -5'
31032 5' -57.8 NC_006560.1 + 3431 0.66 0.857703
Target:  5'- cGGGCGcggGCGCCCG-CGgGGgcGagGa -3'
miRNA:   3'- aCCUGUa--CGCGGGCaGCgCCuuCagC- -5'
31032 5' -57.8 NC_006560.1 + 99478 0.66 0.857703
Target:  5'- cGGACggGCGCgCCGcCcgGCGG-AGUCc -3'
miRNA:   3'- aCCUGuaCGCG-GGCaG--CGCCuUCAGc -5'
31032 5' -57.8 NC_006560.1 + 145813 0.66 0.857703
Target:  5'- cGGGCAcaCGCCCGgccucgCGCGGcGGGcCGg -3'
miRNA:   3'- aCCUGUacGCGGGCa-----GCGCC-UUCaGC- -5'
31032 5' -57.8 NC_006560.1 + 82048 0.66 0.857703
Target:  5'- cUGGACGagGCccucgaaggaGUCCG-CGCGGcGGUCGg -3'
miRNA:   3'- -ACCUGUa-CG----------CGGGCaGCGCCuUCAGC- -5'
31032 5' -57.8 NC_006560.1 + 130734 0.66 0.856944
Target:  5'- -cGACGUGaccuuccCGCCCGU-GCGGAaggagggcgcGGUCGg -3'
miRNA:   3'- acCUGUAC-------GCGGGCAgCGCCU----------UCAGC- -5'
31032 5' -57.8 NC_006560.1 + 109710 0.66 0.85542
Target:  5'- gGGAgCGcUGCGCCCGgcgUauaugagcggccggGCGGggGUCc -3'
miRNA:   3'- aCCU-GU-ACGCGGGCa--G--------------CGCCuuCAGc -5'
31032 5' -57.8 NC_006560.1 + 51393 0.66 0.850025
Target:  5'- gGcGAC-UGCGCCCucaaCGCGGugcuGGUCGc -3'
miRNA:   3'- aC-CUGuACGCGGGca--GCGCCu---UCAGC- -5'
31032 5' -57.8 NC_006560.1 + 108667 0.66 0.850025
Target:  5'- aGGACgucgGUGCgGCCCGcCGCcgGGccGUCGu -3'
miRNA:   3'- aCCUG----UACG-CGGGCaGCG--CCuuCAGC- -5'
31032 5' -57.8 NC_006560.1 + 94010 0.66 0.850025
Target:  5'- gGGACGUcGCGgCCuucuUCGCGG-AGUCc -3'
miRNA:   3'- aCCUGUA-CGCgGGc---AGCGCCuUCAGc -5'
31032 5' -57.8 NC_006560.1 + 1868 0.66 0.850025
Target:  5'- cGGGCggGgGUCgCGg-GCGGggGUCGc -3'
miRNA:   3'- aCCUGuaCgCGG-GCagCGCCuuCAGC- -5'
31032 5' -57.8 NC_006560.1 + 19145 0.66 0.850025
Target:  5'- cGGAaacccuauCGUGCGUCgGUCuguucucuCGGGAGUCGg -3'
miRNA:   3'- aCCU--------GUACGCGGgCAGc-------GCCUUCAGC- -5'
31032 5' -57.8 NC_006560.1 + 58744 0.66 0.850025
Target:  5'- cGGACGccgagaaGCGCCCGUUG-GGccccagcuccaGAGUCGu -3'
miRNA:   3'- aCCUGUa------CGCGGGCAGCgCC-----------UUCAGC- -5'
31032 5' -57.8 NC_006560.1 + 78220 0.66 0.850025
Target:  5'- cUGGACGcGCuGCUCGaggCGCGccuGggGUCGg -3'
miRNA:   3'- -ACCUGUaCG-CGGGCa--GCGC---CuuCAGC- -5'
31032 5' -57.8 NC_006560.1 + 146476 0.66 0.850025
Target:  5'- gGGGCGgagcgGCGgCCGcgaGCGGAGGUg- -3'
miRNA:   3'- aCCUGUa----CGCgGGCag-CGCCUUCAgc -5'
31032 5' -57.8 NC_006560.1 + 131411 0.66 0.8469
Target:  5'- cGGACGcGCGCCCcugggcccgggccGUCGCGGcgcuggcccuggccGAGgcgCGa -3'
miRNA:   3'- aCCUGUaCGCGGG-------------CAGCGCC--------------UUCa--GC- -5'
31032 5' -57.8 NC_006560.1 + 117985 0.66 0.842157
Target:  5'- cUGGGCGcggcgGCGCCCG-CGgCGGcGGcCGa -3'
miRNA:   3'- -ACCUGUa----CGCGGGCaGC-GCCuUCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.