miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31032 5' -57.8 NC_006560.1 + 102151 1.09 0.002048
Target:  5'- cUGGACAUGCGCCCGUCGCGGAAGUCGg -3'
miRNA:   3'- -ACCUGUACGCGGGCAGCGCCUUCAGC- -5'
31032 5' -57.8 NC_006560.1 + 14217 0.78 0.250258
Target:  5'- cGGGCGggGCGCCCGcggUCGCGGGGaucGUCGa -3'
miRNA:   3'- aCCUGUa-CGCGGGC---AGCGCCUU---CAGC- -5'
31032 5' -57.8 NC_006560.1 + 27645 0.78 0.262288
Target:  5'- cGGGCGcgggGCGCggCCGcCGCGGAGGUCGu -3'
miRNA:   3'- aCCUGUa---CGCG--GGCaGCGCCUUCAGC- -5'
31032 5' -57.8 NC_006560.1 + 3257 0.76 0.301198
Target:  5'- cGGGCGgcgcgcgGCGCcagCCGcCGCGGggGUCGg -3'
miRNA:   3'- aCCUGUa------CGCG---GGCaGCGCCuuCAGC- -5'
31032 5' -57.8 NC_006560.1 + 31899 0.75 0.352036
Target:  5'- cGGGCGUGUGCCCGcCGCcccGGAAGa-- -3'
miRNA:   3'- aCCUGUACGCGGGCaGCG---CCUUCagc -5'
31032 5' -57.8 NC_006560.1 + 85238 0.75 0.367636
Target:  5'- cGuGACGccgGCGCCCGcggCGCGGAAGcCGg -3'
miRNA:   3'- aC-CUGUa--CGCGGGCa--GCGCCUUCaGC- -5'
31032 5' -57.8 NC_006560.1 + 37242 0.74 0.391086
Target:  5'- cGGAgGcUGCuGCCCGUCGCGGAcucacgcgcacguGGUCc -3'
miRNA:   3'- aCCUgU-ACG-CGGGCAGCGCCU-------------UCAGc -5'
31032 5' -57.8 NC_006560.1 + 21041 0.74 0.400232
Target:  5'- gGGGCGggGCGCCCG-CGCGGcguccccGGUCGc -3'
miRNA:   3'- aCCUGUa-CGCGGGCaGCGCCu------UCAGC- -5'
31032 5' -57.8 NC_006560.1 + 119636 0.74 0.408665
Target:  5'- gGGGCc-GCGCgCaUCGCGGAGGUCGa -3'
miRNA:   3'- aCCUGuaCGCGgGcAGCGCCUUCAGC- -5'
31032 5' -57.8 NC_006560.1 + 85542 0.74 0.417207
Target:  5'- gGGGCGgggGCGCCCGUgggggGCGGggG-CGg -3'
miRNA:   3'- aCCUGUa--CGCGGGCAg----CGCCuuCaGC- -5'
31032 5' -57.8 NC_006560.1 + 5003 0.74 0.417207
Target:  5'- gGGGCGggGUGCCCGUCGCcGccGUCGu -3'
miRNA:   3'- aCCUGUa-CGCGGGCAGCGcCuuCAGC- -5'
31032 5' -57.8 NC_006560.1 + 124815 0.73 0.443474
Target:  5'- -cGGCGacGCGCCCGUCGCGGgcGUg- -3'
miRNA:   3'- acCUGUa-CGCGGGCAGCGCCuuCAgc -5'
31032 5' -57.8 NC_006560.1 + 28197 0.73 0.452434
Target:  5'- cGGGCcgGCgGCCCGggCGgGGAGcGUCGg -3'
miRNA:   3'- aCCUGuaCG-CGGGCa-GCgCCUU-CAGC- -5'
31032 5' -57.8 NC_006560.1 + 39628 0.73 0.452434
Target:  5'- cGGGCGUcgGCGUCCGggCGCGGcgGAGUCu -3'
miRNA:   3'- aCCUGUA--CGCGGGCa-GCGCC--UUCAGc -5'
31032 5' -57.8 NC_006560.1 + 45419 0.73 0.456046
Target:  5'- gUGGACGgagaacgcgcacugGCGCCCGggcagccaucgCGUGGggGUCa -3'
miRNA:   3'- -ACCUGUa-------------CGCGGGCa----------GCGCCuuCAGc -5'
31032 5' -57.8 NC_006560.1 + 120276 0.73 0.469726
Target:  5'- cGaGACGUGCGuCCCGUCggcccacGCGGAcucGGUCa -3'
miRNA:   3'- aC-CUGUACGC-GGGCAG-------CGCCU---UCAGc -5'
31032 5' -57.8 NC_006560.1 + 15921 0.73 0.470646
Target:  5'- aGGGCGUG-GCCCGUUGgGGggGa-- -3'
miRNA:   3'- aCCUGUACgCGGGCAGCgCCuuCagc -5'
31032 5' -57.8 NC_006560.1 + 11505 0.73 0.47989
Target:  5'- cGGGCGccggggagGCGCUCGUCGCccgacccccgccGGggGUCGc -3'
miRNA:   3'- aCCUGUa-------CGCGGGCAGCG------------CCuuCAGC- -5'
31032 5' -57.8 NC_006560.1 + 139248 0.73 0.492979
Target:  5'- gGGuCcgGCGCCCGgacccccgggggcgCGCGGucGUCGg -3'
miRNA:   3'- aCCuGuaCGCGGGCa-------------GCGCCuuCAGC- -5'
31032 5' -57.8 NC_006560.1 + 107548 0.72 0.508136
Target:  5'- cGGACggGCcuCCCGUCccuGUGGggGUCGu -3'
miRNA:   3'- aCCUGuaCGc-GGGCAG---CGCCuuCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.