miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31032 5' -57.8 NC_006560.1 + 117985 0.66 0.842157
Target:  5'- cUGGGCGcggcgGCGCCCG-CGgCGGcGGcCGa -3'
miRNA:   3'- -ACCUGUa----CGCGGGCaGC-GCCuUCaGC- -5'
31032 5' -57.8 NC_006560.1 + 25913 0.66 0.842157
Target:  5'- gGGGCGcGCGCaCGggcCGCGGAGG-CGu -3'
miRNA:   3'- aCCUGUaCGCGgGCa--GCGCCUUCaGC- -5'
31032 5' -57.8 NC_006560.1 + 9193 0.66 0.834105
Target:  5'- cGGGCGUcaGCGCCgGU-GCGGuGGaUCGg -3'
miRNA:   3'- aCCUGUA--CGCGGgCAgCGCCuUC-AGC- -5'
31032 5' -57.8 NC_006560.1 + 5646 0.66 0.829188
Target:  5'- cGGGCG-GCGCCCggccggcuccgccccGgggCGCGGggG-CGg -3'
miRNA:   3'- aCCUGUaCGCGGG---------------Ca--GCGCCuuCaGC- -5'
31032 5' -57.8 NC_006560.1 + 54671 0.66 0.826706
Target:  5'- gGGGCGcggcagccgccggccGCGCCCucguaGUcCGUGGggGUCGg -3'
miRNA:   3'- aCCUGUa--------------CGCGGG-----CA-GCGCCuuCAGC- -5'
31032 5' -57.8 NC_006560.1 + 32382 0.66 0.825875
Target:  5'- gGGGCAgaGgGCCCccCGCGGggG-CGg -3'
miRNA:   3'- aCCUGUa-CgCGGGcaGCGCCuuCaGC- -5'
31032 5' -57.8 NC_006560.1 + 58355 0.66 0.825875
Target:  5'- gGGGCGcGCcCCCGUCucuuccGCGGggGgagCGg -3'
miRNA:   3'- aCCUGUaCGcGGGCAG------CGCCuuCa--GC- -5'
31032 5' -57.8 NC_006560.1 + 14111 0.66 0.825875
Target:  5'- aGGACGgcccccGCGCCCaUgGCGGccaGGGUCa -3'
miRNA:   3'- aCCUGUa-----CGCGGGcAgCGCC---UUCAGc -5'
31032 5' -57.8 NC_006560.1 + 33503 0.66 0.825875
Target:  5'- gGaGGCggGCGCCgGcC-CGGggGUCGg -3'
miRNA:   3'- aC-CUGuaCGCGGgCaGcGCCuuCAGC- -5'
31032 5' -57.8 NC_006560.1 + 43116 0.66 0.825875
Target:  5'- -cGACG-GCcgGUCCGUCGCGGccgcgGGGUCGg -3'
miRNA:   3'- acCUGUaCG--CGGGCAGCGCC-----UUCAGC- -5'
31032 5' -57.8 NC_006560.1 + 61785 0.66 0.825875
Target:  5'- cGGugGUGUgcacgGCCuCGUCGCGGcuaauGAGaUCGu -3'
miRNA:   3'- aCCugUACG-----CGG-GCAGCGCC-----UUC-AGC- -5'
31032 5' -57.8 NC_006560.1 + 14561 0.66 0.825875
Target:  5'- gGGGCGgcgGCGCUcaCGcCuCGGAGGUCGc -3'
miRNA:   3'- aCCUGUa--CGCGG--GCaGcGCCUUCAGC- -5'
31032 5' -57.8 NC_006560.1 + 81872 0.66 0.825875
Target:  5'- gGGACGUcCGCCCaGUCGCGcauGAGcCGc -3'
miRNA:   3'- aCCUGUAcGCGGG-CAGCGCc--UUCaGC- -5'
31032 5' -57.8 NC_006560.1 + 15821 0.67 0.817476
Target:  5'- -cGACAgcCGCCCGaCGUGG-AGUCGg -3'
miRNA:   3'- acCUGUacGCGGGCaGCGCCuUCAGC- -5'
31032 5' -57.8 NC_006560.1 + 22897 0.67 0.817476
Target:  5'- gGGGC--GCGCCCGaggUgGCGGAGG-CGc -3'
miRNA:   3'- aCCUGuaCGCGGGC---AgCGCCUUCaGC- -5'
31032 5' -57.8 NC_006560.1 + 136272 0.67 0.817476
Target:  5'- gUGGGCu--CGCCCacgcagaccgcGUCGCuGGAGUCGa -3'
miRNA:   3'- -ACCUGuacGCGGG-----------CAGCGcCUUCAGC- -5'
31032 5' -57.8 NC_006560.1 + 64661 0.67 0.817476
Target:  5'- cGGACcgGCGUCCacgcGUCGUGGGgcauGGgCGg -3'
miRNA:   3'- aCCUGuaCGCGGG----CAGCGCCU----UCaGC- -5'
31032 5' -57.8 NC_006560.1 + 118972 0.67 0.817476
Target:  5'- cGGACcagaGCGCgUGgcUCGgGGAGGUCGc -3'
miRNA:   3'- aCCUGua--CGCGgGC--AGCgCCUUCAGC- -5'
31032 5' -57.8 NC_006560.1 + 31797 0.67 0.815777
Target:  5'- cUGGACccccgccgaggGCGaCCCGUagggaCGCGGggGUgGg -3'
miRNA:   3'- -ACCUGua---------CGC-GGGCA-----GCGCCuuCAgC- -5'
31032 5' -57.8 NC_006560.1 + 12690 0.67 0.808915
Target:  5'- -cGACGaugGCGCCCGUguggucgGCGGggGUgGg -3'
miRNA:   3'- acCUGUa--CGCGGGCAg------CGCCuuCAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.