miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31033 3' -53.9 NC_006560.1 + 114820 0.66 0.964288
Target:  5'- aUCUaCGACGCAucuccgcuGCGGGggCUGgCGCUg -3'
miRNA:   3'- -AGAcGCUGUGUu-------UGUCCa-GACgGCGG- -5'
31033 3' -53.9 NC_006560.1 + 83856 0.66 0.964288
Target:  5'- cCUGCGGCGCcucCGGGcCgagGUCGUCc -3'
miRNA:   3'- aGACGCUGUGuuuGUCCaGa--CGGCGG- -5'
31033 3' -53.9 NC_006560.1 + 105063 0.66 0.964288
Target:  5'- cUCUGCuuGCucCucGCGGGUCUcGCCGUCc -3'
miRNA:   3'- -AGACGc-UGu-GuuUGUCCAGA-CGGCGG- -5'
31033 3' -53.9 NC_006560.1 + 74919 0.66 0.964288
Target:  5'- --cGCGACGgccagccccgaGAGCAcGGUCgaggcgGCCGCCc -3'
miRNA:   3'- agaCGCUGUg----------UUUGU-CCAGa-----CGGCGG- -5'
31033 3' -53.9 NC_006560.1 + 26260 0.66 0.964288
Target:  5'- --gGgGGCGCGucGCGGGgCUcgcGCCGCCg -3'
miRNA:   3'- agaCgCUGUGUu-UGUCCaGA---CGGCGG- -5'
31033 3' -53.9 NC_006560.1 + 45727 0.66 0.963951
Target:  5'- --cGCGGCGCAGgcgcgccGCGGGcUCgcgcccCCGCCa -3'
miRNA:   3'- agaCGCUGUGUU-------UGUCC-AGac----GGCGG- -5'
31033 3' -53.9 NC_006560.1 + 16783 0.66 0.961881
Target:  5'- cCUGgGACGucgaGAACAGGgacgccgugugcacgGCCGCCu -3'
miRNA:   3'- aGACgCUGUg---UUUGUCCaga------------CGGCGG- -5'
31033 3' -53.9 NC_006560.1 + 9119 0.66 0.961173
Target:  5'- --cGCGGCACGucauugcgagggcccGCAGGUCUucgGCgaCGCCg -3'
miRNA:   3'- agaCGCUGUGUu--------------UGUCCAGA---CG--GCGG- -5'
31033 3' -53.9 NC_006560.1 + 5402 0.66 0.960815
Target:  5'- --cGCGGCAUGgucGGCAcGGUCgccaCCGCCg -3'
miRNA:   3'- agaCGCUGUGU---UUGU-CCAGac--GGCGG- -5'
31033 3' -53.9 NC_006560.1 + 118041 0.66 0.960815
Target:  5'- gCU-CGGCGgGGGCGGGcCcggcGCCGCCg -3'
miRNA:   3'- aGAcGCUGUgUUUGUCCaGa---CGGCGG- -5'
31033 3' -53.9 NC_006560.1 + 680 0.66 0.960815
Target:  5'- --cGCGGCGCGGGCucGUCgcggGCC-CCg -3'
miRNA:   3'- agaCGCUGUGUUUGucCAGa---CGGcGG- -5'
31033 3' -53.9 NC_006560.1 + 85487 0.66 0.960815
Target:  5'- cCUGCGcCGCuugggcuCGGGgucgccgggCUGCUGCCc -3'
miRNA:   3'- aGACGCuGUGuuu----GUCCa--------GACGGCGG- -5'
31033 3' -53.9 NC_006560.1 + 118808 0.66 0.960815
Target:  5'- cCUGCGcCACGcGCGGcccGUCcUGgCGCCg -3'
miRNA:   3'- aGACGCuGUGUuUGUC---CAG-ACgGCGG- -5'
31033 3' -53.9 NC_006560.1 + 105018 0.66 0.960456
Target:  5'- -aUGCG-CGCgGAACGGGcgCUccgcggcGCCGCCg -3'
miRNA:   3'- agACGCuGUG-UUUGUCCa-GA-------CGGCGG- -5'
31033 3' -53.9 NC_006560.1 + 7267 0.66 0.957116
Target:  5'- -gUGCGcCGCcGACcccGGacCUGCCGCCg -3'
miRNA:   3'- agACGCuGUGuUUGu--CCa-GACGGCGG- -5'
31033 3' -53.9 NC_006560.1 + 77413 0.66 0.957116
Target:  5'- --gGCGGCGCGcGCGcgcccGGcgCUGCCGUCc -3'
miRNA:   3'- agaCGCUGUGUuUGU-----CCa-GACGGCGG- -5'
31033 3' -53.9 NC_006560.1 + 80855 0.66 0.957116
Target:  5'- gCUGCG-CGCGGGCuGGgcggCggggGCgGCCa -3'
miRNA:   3'- aGACGCuGUGUUUGuCCa---Ga---CGgCGG- -5'
31033 3' -53.9 NC_006560.1 + 21642 0.66 0.957116
Target:  5'- -aUGCGAUcCucGACGGG-CggcGCCGCCg -3'
miRNA:   3'- agACGCUGuGu-UUGUCCaGa--CGGCGG- -5'
31033 3' -53.9 NC_006560.1 + 21681 0.66 0.957116
Target:  5'- -aUGCGAUcCucGACGGG-CggcGCCGCCg -3'
miRNA:   3'- agACGCUGuGu-UUGUCCaGa--CGGCGG- -5'
31033 3' -53.9 NC_006560.1 + 78608 0.66 0.954785
Target:  5'- gUCUgGCGGCGCAGcugcccgcccuguccGCGcuGGUC-GCCGCg -3'
miRNA:   3'- -AGA-CGCUGUGUU---------------UGU--CCAGaCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.