miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31033 5' -55.2 NC_006560.1 + 84497 0.66 0.949519
Target:  5'- -gAGCGguaccgCGGCGUGU-UCGcCGCGCUc -3'
miRNA:   3'- agUUGCa-----GCUGCACGcAGCaGCGCGA- -5'
31033 5' -55.2 NC_006560.1 + 137283 0.66 0.945242
Target:  5'- aCGACcUCGACGUG-GUCuUCGCGg- -3'
miRNA:   3'- aGUUGcAGCUGCACgCAGcAGCGCga -5'
31033 5' -55.2 NC_006560.1 + 18923 0.66 0.945242
Target:  5'- cCGGCGUC--CGUGCGcggCGUgcCGCGCg -3'
miRNA:   3'- aGUUGCAGcuGCACGCa--GCA--GCGCGa -5'
31033 5' -55.2 NC_006560.1 + 5077 0.66 0.945242
Target:  5'- cUCGuCGcCGGCGUGCGg---CGCGCc -3'
miRNA:   3'- -AGUuGCaGCUGCACGCagcaGCGCGa -5'
31033 5' -55.2 NC_006560.1 + 135070 0.66 0.940735
Target:  5'- gCGACGUCGGCGUcggggGCGccgcCGUaccgGCGCa -3'
miRNA:   3'- aGUUGCAGCUGCA-----CGCa---GCAg---CGCGa -5'
31033 5' -55.2 NC_006560.1 + 101753 0.66 0.940735
Target:  5'- uUC-ACGUCGGCG-GcCG-CGUCGCGg- -3'
miRNA:   3'- -AGuUGCAGCUGCaC-GCaGCAGCGCga -5'
31033 5' -55.2 NC_006560.1 + 58900 0.66 0.935994
Target:  5'- -gAGCGUCG-CGgcGCGgagcucCGUCGCGCc -3'
miRNA:   3'- agUUGCAGCuGCa-CGCa-----GCAGCGCGa -5'
31033 5' -55.2 NC_006560.1 + 97173 0.66 0.935994
Target:  5'- gUCGcGCGUCGACcucgcggacUGCGUCGg-GCGCg -3'
miRNA:   3'- -AGU-UGCAGCUGc--------ACGCAGCagCGCGa -5'
31033 5' -55.2 NC_006560.1 + 52269 0.66 0.935994
Target:  5'- cCGAUG-CgGGCGcgGCGUCGaCGCGCa -3'
miRNA:   3'- aGUUGCaG-CUGCa-CGCAGCaGCGCGa -5'
31033 5' -55.2 NC_006560.1 + 89760 0.66 0.935994
Target:  5'- cCAACGUgGcCGU-CGUCGUCGgGUc -3'
miRNA:   3'- aGUUGCAgCuGCAcGCAGCAGCgCGa -5'
31033 5' -55.2 NC_006560.1 + 148025 0.66 0.935994
Target:  5'- gUCGuCGUCGACGUccgaGUCGUCGuCGg- -3'
miRNA:   3'- -AGUuGCAGCUGCAcg--CAGCAGC-GCga -5'
31033 5' -55.2 NC_006560.1 + 4053 0.66 0.931019
Target:  5'- gCGGCGccggccgCGGCG-GCGUUcUCGCGCg -3'
miRNA:   3'- aGUUGCa------GCUGCaCGCAGcAGCGCGa -5'
31033 5' -55.2 NC_006560.1 + 80965 0.67 0.925809
Target:  5'- gCAGCGcCaGCGUGUGguucgCGUgCGCGCg -3'
miRNA:   3'- aGUUGCaGcUGCACGCa----GCA-GCGCGa -5'
31033 5' -55.2 NC_006560.1 + 5519 0.67 0.925809
Target:  5'- -gAGgGUCGGCG-GCG--GUCGCGCUc -3'
miRNA:   3'- agUUgCAGCUGCaCGCagCAGCGCGA- -5'
31033 5' -55.2 NC_006560.1 + 24944 0.67 0.925809
Target:  5'- gCAACGUCGcuaccGCGUGCG-Ca-CGCGCc -3'
miRNA:   3'- aGUUGCAGC-----UGCACGCaGcaGCGCGa -5'
31033 5' -55.2 NC_006560.1 + 8720 0.67 0.925809
Target:  5'- aUCAGaaaGUCGGCGgccGUcUCGUCGuCGCUc -3'
miRNA:   3'- -AGUUg--CAGCUGCa--CGcAGCAGC-GCGA- -5'
31033 5' -55.2 NC_006560.1 + 99975 0.67 0.925809
Target:  5'- gUCGcucGCGUCGGgGccUGgGUcCGUCGCGCc -3'
miRNA:   3'- -AGU---UGCAGCUgC--ACgCA-GCAGCGCGa -5'
31033 5' -55.2 NC_006560.1 + 40884 0.67 0.920364
Target:  5'- gCGGCGgCGACacgGCGUggccgccgauuaCGUCGCGCg -3'
miRNA:   3'- aGUUGCaGCUGca-CGCA------------GCAGCGCGa -5'
31033 5' -55.2 NC_006560.1 + 36928 0.67 0.916983
Target:  5'- -gAGCGUCuGGCGgcgcUGCGuccccgggacuccggUCGUCGCGCc -3'
miRNA:   3'- agUUGCAG-CUGC----ACGC---------------AGCAGCGCGa -5'
31033 5' -55.2 NC_006560.1 + 125987 0.67 0.914683
Target:  5'- aUCaAGCGuUCGGugguuCGUGUGUCuGUCGUGCg -3'
miRNA:   3'- -AG-UUGC-AGCU-----GCACGCAG-CAGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.