miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31033 5' -55.2 NC_006560.1 + 99091 1.09 0.004173
Target:  5'- gUCAACGUCGACGUGCGUCGUCGCGCUg -3'
miRNA:   3'- -AGUUGCAGCUGCACGCAGCAGCGCGA- -5'
31033 5' -55.2 NC_006560.1 + 3354 0.8 0.286224
Target:  5'- gUCGGCGUCGGCGUcgGCGUCGgCGgGCg -3'
miRNA:   3'- -AGUUGCAGCUGCA--CGCAGCaGCgCGa -5'
31033 5' -55.2 NC_006560.1 + 5287 0.79 0.31378
Target:  5'- gUCGGCGUCGGCGU-CGUCGUCGgcCGCc -3'
miRNA:   3'- -AGUUGCAGCUGCAcGCAGCAGC--GCGa -5'
31033 5' -55.2 NC_006560.1 + 47933 0.77 0.416754
Target:  5'- -aGACGUCGagGCGUGCGUCucUCGCGCc -3'
miRNA:   3'- agUUGCAGC--UGCACGCAGc-AGCGCGa -5'
31033 5' -55.2 NC_006560.1 + 108045 0.76 0.480086
Target:  5'- cUCGGCGUCGGCGcGCG-CGUCGCu-- -3'
miRNA:   3'- -AGUUGCAGCUGCaCGCaGCAGCGcga -5'
31033 5' -55.2 NC_006560.1 + 3889 0.75 0.528066
Target:  5'- gCGGCGUCGGCG-GCGUCGgcgGCGUc -3'
miRNA:   3'- aGUUGCAGCUGCaCGCAGCag-CGCGa -5'
31033 5' -55.2 NC_006560.1 + 4874 0.74 0.537882
Target:  5'- gUCGACGgcggCGGCGgcgccgGCGggggccgCGUCGCGCUc -3'
miRNA:   3'- -AGUUGCa---GCUGCa-----CGCa------GCAGCGCGA- -5'
31033 5' -55.2 NC_006560.1 + 3484 0.74 0.537882
Target:  5'- gCGGCGUCGGCGUcgGCGUCGgcgGCGUc -3'
miRNA:   3'- aGUUGCAGCUGCA--CGCAGCag-CGCGa -5'
31033 5' -55.2 NC_006560.1 + 43411 0.74 0.567683
Target:  5'- gUCAGCGccgCGGCGccggggGCGUCGgCGCGCg -3'
miRNA:   3'- -AGUUGCa--GCUGCa-----CGCAGCaGCGCGa -5'
31033 5' -55.2 NC_006560.1 + 107993 0.73 0.597883
Target:  5'- -gGACGUCGGCcggGuCGUCGcCGCGCUg -3'
miRNA:   3'- agUUGCAGCUGca-C-GCAGCaGCGCGA- -5'
31033 5' -55.2 NC_006560.1 + 2020 0.73 0.618151
Target:  5'- cUCGGCGUCGGCGagcaGCGU-GUCgGCGCg -3'
miRNA:   3'- -AGUUGCAGCUGCa---CGCAgCAG-CGCGa -5'
31033 5' -55.2 NC_006560.1 + 131482 0.72 0.678957
Target:  5'- uUCGcGCGgguccUCGACG-GCGUCGUCGCGg- -3'
miRNA:   3'- -AGU-UGC-----AGCUGCaCGCAGCAGCGCga -5'
31033 5' -55.2 NC_006560.1 + 23388 0.72 0.689007
Target:  5'- aCGGCGcCG-CGgGCGUCGUCGcCGCg -3'
miRNA:   3'- aGUUGCaGCuGCaCGCAGCAGC-GCGa -5'
31033 5' -55.2 NC_006560.1 + 129163 0.72 0.699011
Target:  5'- cCGACGUCGGCccgGaggaGaUCGUCGCGCUc -3'
miRNA:   3'- aGUUGCAGCUGca-Cg---C-AGCAGCGCGA- -5'
31033 5' -55.2 NC_006560.1 + 53556 0.71 0.748022
Target:  5'- cUCcACGcCcGCGUGCGcgCGUCGCGCc -3'
miRNA:   3'- -AGuUGCaGcUGCACGCa-GCAGCGCGa -5'
31033 5' -55.2 NC_006560.1 + 45606 0.71 0.75756
Target:  5'- aCGAUGUCGAUGcccGCGUCcucggCGCGCUu -3'
miRNA:   3'- aGUUGCAGCUGCa--CGCAGca---GCGCGA- -5'
31033 5' -55.2 NC_006560.1 + 24728 0.7 0.766989
Target:  5'- ---cCGcCGACGggccCGUCGUCGCGCg -3'
miRNA:   3'- aguuGCaGCUGCac--GCAGCAGCGCGa -5'
31033 5' -55.2 NC_006560.1 + 85586 0.7 0.785483
Target:  5'- -gGGCG-CGGCGggcgcgGCGUCGagcUCGCGCa -3'
miRNA:   3'- agUUGCaGCUGCa-----CGCAGC---AGCGCGa -5'
31033 5' -55.2 NC_006560.1 + 74896 0.7 0.79453
Target:  5'- aUCAACGcCGGCGgcGCGgcCGUCGCGaCg -3'
miRNA:   3'- -AGUUGCaGCUGCa-CGCa-GCAGCGC-Ga -5'
31033 5' -55.2 NC_006560.1 + 19631 0.69 0.829195
Target:  5'- cCGAguCGUCgGGCGUGuCGUCGUCGC-Cg -3'
miRNA:   3'- aGUU--GCAG-CUGCAC-GCAGCAGCGcGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.