miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31033 5' -55.2 NC_006560.1 + 131847 0.67 0.908768
Target:  5'- gCGGCGgCGGCG-GCGacgCGgcgCGCGCUg -3'
miRNA:   3'- aGUUGCaGCUGCaCGCa--GCa--GCGCGA- -5'
31033 5' -55.2 NC_006560.1 + 93674 0.67 0.908768
Target:  5'- cCGGCGUCGGCG-GCGgacgaCGcCGCGg- -3'
miRNA:   3'- aGUUGCAGCUGCaCGCa----GCaGCGCga -5'
31033 5' -55.2 NC_006560.1 + 42607 0.67 0.902622
Target:  5'- --cGCGUCccGCGUGacgcggucccaGUCGUCGCGCg -3'
miRNA:   3'- aguUGCAGc-UGCACg----------CAGCAGCGCGa -5'
31033 5' -55.2 NC_006560.1 + 75456 0.67 0.901365
Target:  5'- -gGACGUCGACGcggcgcuggaccGCGUCGagaacCGCGCc -3'
miRNA:   3'- agUUGCAGCUGCa-----------CGCAGCa----GCGCGa -5'
31033 5' -55.2 NC_006560.1 + 76112 0.67 0.896245
Target:  5'- -gGACGcccuggCcGCGUGCGUCGggGCGCUg -3'
miRNA:   3'- agUUGCa-----GcUGCACGCAGCagCGCGA- -5'
31033 5' -55.2 NC_006560.1 + 55729 0.68 0.889642
Target:  5'- gUCAGgGUCGAgGUGgccgagaaGcCGUCGCGCc -3'
miRNA:   3'- -AGUUgCAGCUgCACg-------CaGCAGCGCGa -5'
31033 5' -55.2 NC_006560.1 + 127694 0.68 0.889642
Target:  5'- cCGACGUCGcgguGCGUGacgGUgGUcCGCGCg -3'
miRNA:   3'- aGUUGCAGC----UGCACg--CAgCA-GCGCGa -5'
31033 5' -55.2 NC_006560.1 + 130669 0.68 0.882816
Target:  5'- --cGCGUCGGCG-GCGUCGcUgGCGg- -3'
miRNA:   3'- aguUGCAGCUGCaCGCAGC-AgCGCga -5'
31033 5' -55.2 NC_006560.1 + 110868 0.68 0.882816
Target:  5'- aCAGCcuGUaCGACGUGCaguUCGaCGCGCUg -3'
miRNA:   3'- aGUUG--CA-GCUGCACGc--AGCaGCGCGA- -5'
31033 5' -55.2 NC_006560.1 + 127171 0.68 0.881424
Target:  5'- cUCGGCGgcguccugccggCGGCGguagcgcGcCGUCGUCGCGCc -3'
miRNA:   3'- -AGUUGCa-----------GCUGCa------C-GCAGCAGCGCGa -5'
31033 5' -55.2 NC_006560.1 + 2070 0.68 0.876485
Target:  5'- gCGGCGcggCGGCGggguccgggggcccgGCGUCGgCGCGCa -3'
miRNA:   3'- aGUUGCa--GCUGCa--------------CGCAGCaGCGCGa -5'
31033 5' -55.2 NC_006560.1 + 127564 0.68 0.875771
Target:  5'- --cGCGUCGA-GcGUGUCGcUCGCGCg -3'
miRNA:   3'- aguUGCAGCUgCaCGCAGC-AGCGCGa -5'
31033 5' -55.2 NC_006560.1 + 105840 0.68 0.868511
Target:  5'- gCGACGcCGcgcuCGUGCG-CG-CGCGCUa -3'
miRNA:   3'- aGUUGCaGCu---GCACGCaGCaGCGCGA- -5'
31033 5' -55.2 NC_006560.1 + 107788 0.68 0.861042
Target:  5'- gCGGCGaCccuCGUGCGggUCGUCGCGCc -3'
miRNA:   3'- aGUUGCaGcu-GCACGC--AGCAGCGCGa -5'
31033 5' -55.2 NC_006560.1 + 127128 0.68 0.857997
Target:  5'- cCAGCGUCG-CGUGCGUgaccaccaugcggGUCGCGg- -3'
miRNA:   3'- aGUUGCAGCuGCACGCAg------------CAGCGCga -5'
31033 5' -55.2 NC_006560.1 + 89697 0.69 0.85337
Target:  5'- cCGACGcCGACGcgGCG--GUCGCGCc -3'
miRNA:   3'- aGUUGCaGCUGCa-CGCagCAGCGCGa -5'
31033 5' -55.2 NC_006560.1 + 71300 0.69 0.85337
Target:  5'- cCAucGCGUcCGugGUccGCGUCGugUCGCGCc -3'
miRNA:   3'- aGU--UGCA-GCugCA--CGCAGC--AGCGCGa -5'
31033 5' -55.2 NC_006560.1 + 9086 0.69 0.85337
Target:  5'- gCGGCGgggCGACG-GCGgagCG-CGCGCg -3'
miRNA:   3'- aGUUGCa--GCUGCaCGCa--GCaGCGCGa -5'
31033 5' -55.2 NC_006560.1 + 146306 0.69 0.85337
Target:  5'- gUCGGCGUccaCGugGUGgGUCuucCGCGCa -3'
miRNA:   3'- -AGUUGCA---GCugCACgCAGca-GCGCGa -5'
31033 5' -55.2 NC_006560.1 + 147507 0.69 0.844702
Target:  5'- cUCGGCGUCGuCGc-CGUCGUCGCugucgucGCUg -3'
miRNA:   3'- -AGUUGCAGCuGCacGCAGCAGCG-------CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.