miRNA display CGI


Results 1 - 20 of 108 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31034 3' -54.5 NC_006560.1 + 133541 0.66 0.957347
Target:  5'- gGCG-GGGAGccGGcggCgCGCgGCGUGGCg -3'
miRNA:   3'- -CGCgCCCUCuaCUa--G-GCGaUGUACCG- -5'
31034 3' -54.5 NC_006560.1 + 118045 0.66 0.957347
Target:  5'- -gGCGGGGGcgGGcccggcgCCGCcGCG-GGCg -3'
miRNA:   3'- cgCGCCCUCuaCUa------GGCGaUGUaCCG- -5'
31034 3' -54.5 NC_006560.1 + 116806 0.66 0.957347
Target:  5'- aGCuCGGGGGccAUGAggCCGCcguuCGUGGUg -3'
miRNA:   3'- -CGcGCCCUC--UACUa-GGCGau--GUACCG- -5'
31034 3' -54.5 NC_006560.1 + 115741 0.66 0.956969
Target:  5'- aCGCGGGAGGcggcgcagcUGAUCCacccgagGCgcCcgGGCc -3'
miRNA:   3'- cGCGCCCUCU---------ACUAGG-------CGauGuaCCG- -5'
31034 3' -54.5 NC_006560.1 + 96730 0.66 0.956589
Target:  5'- cGCGCGGGucGAggccuuccaCCGCUAC--GGCa -3'
miRNA:   3'- -CGCGCCCu-CUacua-----GGCGAUGuaCCG- -5'
31034 3' -54.5 NC_006560.1 + 137757 0.66 0.953866
Target:  5'- gGCGCGGGAGcUGGccauggccacgaacgCCGaCUAC--GGCa -3'
miRNA:   3'- -CGCGCCCUCuACUa--------------GGC-GAUGuaCCG- -5'
31034 3' -54.5 NC_006560.1 + 121239 0.66 0.953467
Target:  5'- cCGUGGGAGcgc--CCG-UGCGUGGCg -3'
miRNA:   3'- cGCGCCCUCuacuaGGCgAUGUACCG- -5'
31034 3' -54.5 NC_006560.1 + 120491 0.66 0.953467
Target:  5'- uCGCGGcccaccugcacGAGGUGGUCgCGggGCAgcggGGCg -3'
miRNA:   3'- cGCGCC-----------CUCUACUAG-GCgaUGUa---CCG- -5'
31034 3' -54.5 NC_006560.1 + 101562 0.66 0.953467
Target:  5'- -gGCGGuugucGAGgcGGUCCGCgUACAcguuuccguUGGCg -3'
miRNA:   3'- cgCGCC-----CUCuaCUAGGCG-AUGU---------ACCG- -5'
31034 3' -54.5 NC_006560.1 + 68115 0.66 0.953467
Target:  5'- aCGCGGGGGAgGAcgCCGUguUGCugucGGCc -3'
miRNA:   3'- cGCGCCCUCUaCUa-GGCG--AUGua--CCG- -5'
31034 3' -54.5 NC_006560.1 + 1971 0.66 0.949357
Target:  5'- aGgGCGGGGGcgGggCuCGggGCcgGGCc -3'
miRNA:   3'- -CgCGCCCUCuaCuaG-GCgaUGuaCCG- -5'
31034 3' -54.5 NC_006560.1 + 10463 0.66 0.949357
Target:  5'- cGCGCGGGGGccacgCCGCcuCggGGCc -3'
miRNA:   3'- -CGCGCCCUCuacuaGGCGauGuaCCG- -5'
31034 3' -54.5 NC_006560.1 + 27817 0.66 0.949357
Target:  5'- cGCGCGGGGcccu-UCCGCgGCcgGGg -3'
miRNA:   3'- -CGCGCCCUcuacuAGGCGaUGuaCCg -5'
31034 3' -54.5 NC_006560.1 + 81560 0.66 0.945012
Target:  5'- cGCGCGacaGAgGAUGcgCCGCgUGCGgccGGCg -3'
miRNA:   3'- -CGCGCc--CU-CUACuaGGCG-AUGUa--CCG- -5'
31034 3' -54.5 NC_006560.1 + 71128 0.66 0.945012
Target:  5'- gGUGCGGGAGGaaggGAgccuUCUGCcccUGCccGGCu -3'
miRNA:   3'- -CGCGCCCUCUa---CU----AGGCG---AUGuaCCG- -5'
31034 3' -54.5 NC_006560.1 + 26125 0.66 0.945012
Target:  5'- uCGCGGGGGccccgCCgggGCUGCGUGGg -3'
miRNA:   3'- cGCGCCCUCuacuaGG---CGAUGUACCg -5'
31034 3' -54.5 NC_006560.1 + 118218 0.66 0.940429
Target:  5'- cGUGCGGGAcGUGGcCCGCcgGCAcccGGUc -3'
miRNA:   3'- -CGCGCCCUcUACUaGGCGa-UGUa--CCG- -5'
31034 3' -54.5 NC_006560.1 + 16275 0.66 0.940429
Target:  5'- cGCGCGcGGAGAcggccgaccccUGGggCGCgGCggGGCg -3'
miRNA:   3'- -CGCGC-CCUCU-----------ACUagGCGaUGuaCCG- -5'
31034 3' -54.5 NC_006560.1 + 135381 0.66 0.940429
Target:  5'- cGCGgGGGGGcgGAggCCGCggg--GGUg -3'
miRNA:   3'- -CGCgCCCUCuaCUa-GGCGauguaCCG- -5'
31034 3' -54.5 NC_006560.1 + 75503 0.66 0.940429
Target:  5'- aCGCGGucGAGcUGcgCCGCcUGCA-GGCg -3'
miRNA:   3'- cGCGCC--CUCuACuaGGCG-AUGUaCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.