miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31034 5' -57.9 NC_006560.1 + 39607 0.65 0.843102
Target:  5'- cCGGCCcgcGGAGCGCcgcGgcgggcgucggcguCCGGGCGCGGc -3'
miRNA:   3'- -GCCGGua-CCUCGCG---U--------------GGCUCGUGUUc -5'
31034 5' -57.9 NC_006560.1 + 110371 0.66 0.83744
Target:  5'- uGGCCGccgGGcaGGCGCGCCaGGcCGCAGa -3'
miRNA:   3'- gCCGGUa--CC--UCGCGUGGcUC-GUGUUc -5'
31034 5' -57.9 NC_006560.1 + 2350 0.66 0.83744
Target:  5'- gCGGCCGUcGAGCGCGggcAGCACGGc -3'
miRNA:   3'- -GCCGGUAcCUCGCGUggcUCGUGUUc -5'
31034 5' -57.9 NC_006560.1 + 35186 0.66 0.83744
Target:  5'- gGGCCccgccccgGGGGCGCcggggcCCGGGCGCc-- -3'
miRNA:   3'- gCCGGua------CCUCGCGu-----GGCUCGUGuuc -5'
31034 5' -57.9 NC_006560.1 + 55448 0.66 0.83744
Target:  5'- gGGCgAgcccGGGGCGC-CCGGG-GCAGGg -3'
miRNA:   3'- gCCGgUa---CCUCGCGuGGCUCgUGUUC- -5'
31034 5' -57.9 NC_006560.1 + 81516 0.66 0.83744
Target:  5'- uCGGCCcucugggugcgGUGGcGGCGCGCCaGGGCGu--- -3'
miRNA:   3'- -GCCGG-----------UACC-UCGCGUGG-CUCGUguuc -5'
31034 5' -57.9 NC_006560.1 + 108847 0.66 0.83744
Target:  5'- uGGCCG-GGAGCuCGaaGAGCuCGAGg -3'
miRNA:   3'- gCCGGUaCCUCGcGUggCUCGuGUUC- -5'
31034 5' -57.9 NC_006560.1 + 142534 0.66 0.83744
Target:  5'- gGGCCccGGgcccGGCG-GCCGGGCGCGu- -3'
miRNA:   3'- gCCGGuaCC----UCGCgUGGCUCGUGUuc -5'
31034 5' -57.9 NC_006560.1 + 147101 0.66 0.83744
Target:  5'- uCGGCgGgggGcGGGCGCgcgacgcggGCCGcGGCGCGAGg -3'
miRNA:   3'- -GCCGgUa--C-CUCGCG---------UGGC-UCGUGUUC- -5'
31034 5' -57.9 NC_006560.1 + 26658 0.66 0.83744
Target:  5'- gGGCCGcGGGGgGgACgGGGcCGCGGGg -3'
miRNA:   3'- gCCGGUaCCUCgCgUGgCUC-GUGUUC- -5'
31034 5' -57.9 NC_006560.1 + 142201 0.66 0.836623
Target:  5'- gCGGCCuccgGGcGGCGCGCCaccagagccauuaGGGCAUcGGg -3'
miRNA:   3'- -GCCGGua--CC-UCGCGUGG-------------CUCGUGuUC- -5'
31034 5' -57.9 NC_006560.1 + 58853 0.66 0.834985
Target:  5'- gCGGCCcUGGGGCagcagcacgacgaaGCugCGAGCucGCGc- -3'
miRNA:   3'- -GCCGGuACCUCG--------------CGugGCUCG--UGUuc -5'
31034 5' -57.9 NC_006560.1 + 60976 0.66 0.829195
Target:  5'- aGGCCGUGGAcugGCuCcCCGAGC-CGAu -3'
miRNA:   3'- gCCGGUACCU---CGcGuGGCUCGuGUUc -5'
31034 5' -57.9 NC_006560.1 + 17180 0.66 0.829195
Target:  5'- aGGCaCGUGaGGCcgccCACCGGGCGCAc- -3'
miRNA:   3'- gCCG-GUACcUCGc---GUGGCUCGUGUuc -5'
31034 5' -57.9 NC_006560.1 + 26977 0.66 0.829195
Target:  5'- gGGCgGgggGGGGCggGCGCaCGGGCGgAAGg -3'
miRNA:   3'- gCCGgUa--CCUCG--CGUG-GCUCGUgUUC- -5'
31034 5' -57.9 NC_006560.1 + 62665 0.66 0.829195
Target:  5'- uGGCUGUGGuccaCGUACgGGGCGCGGu -3'
miRNA:   3'- gCCGGUACCuc--GCGUGgCUCGUGUUc -5'
31034 5' -57.9 NC_006560.1 + 94960 0.66 0.829195
Target:  5'- uGcGCCGcgugcUGGcGCGCAUCGGGgGCGGGc -3'
miRNA:   3'- gC-CGGU-----ACCuCGCGUGGCUCgUGUUC- -5'
31034 5' -57.9 NC_006560.1 + 9097 0.66 0.829195
Target:  5'- aCGGC---GGAGCGCGCgCGcGGCGCGc- -3'
miRNA:   3'- -GCCGguaCCUCGCGUG-GC-UCGUGUuc -5'
31034 5' -57.9 NC_006560.1 + 14213 0.66 0.829195
Target:  5'- uGGUCGggcGGGGCGC-CCGcGGuCGCGGGg -3'
miRNA:   3'- gCCGGUa--CCUCGCGuGGC-UC-GUGUUC- -5'
31034 5' -57.9 NC_006560.1 + 97217 0.66 0.828361
Target:  5'- aGGCCGUGGAcCGCAucuuccuCCG-GCGCu-- -3'
miRNA:   3'- gCCGGUACCUcGCGU-------GGCuCGUGuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.