miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31034 5' -57.9 NC_006560.1 + 651 0.66 0.820774
Target:  5'- aCGGCCccaGGuucgcaccccGGCGCGCCcgcGGCGCGGGc -3'
miRNA:   3'- -GCCGGua-CC----------UCGCGUGGc--UCGUGUUC- -5'
31034 5' -57.9 NC_006560.1 + 980 0.68 0.735475
Target:  5'- -cGCCcgGGGGCGCGCCccucgccccggccgGGGCGCc-- -3'
miRNA:   3'- gcCGGuaCCUCGCGUGG--------------CUCGUGuuc -5'
31034 5' -57.9 NC_006560.1 + 1496 0.7 0.608008
Target:  5'- gCGGCCcacgccggcgGGAGCGCGugcaucgggccCCGGGCGCGc- -3'
miRNA:   3'- -GCCGGua--------CCUCGCGU-----------GGCUCGUGUuc -5'
31034 5' -57.9 NC_006560.1 + 2047 0.67 0.794531
Target:  5'- gCGGCCGgcGGcccAGCGCACgCGcGGCGCGGc -3'
miRNA:   3'- -GCCGGUa-CC---UCGCGUG-GC-UCGUGUUc -5'
31034 5' -57.9 NC_006560.1 + 2350 0.66 0.83744
Target:  5'- gCGGCCGUcGAGCGCGggcAGCACGGc -3'
miRNA:   3'- -GCCGGUAcCUCGCGUggcUCGUGUUc -5'
31034 5' -57.9 NC_006560.1 + 2584 0.67 0.79811
Target:  5'- gGGCCAgcGGAcGuCGCACUGcgcggcgggcagcacGGCGCAGGg -3'
miRNA:   3'- gCCGGUa-CCU-C-GCGUGGC---------------UCGUGUUC- -5'
31034 5' -57.9 NC_006560.1 + 2867 0.66 0.820774
Target:  5'- aGGCgGuUGGccAGCGCGgCGAGCAgGAa -3'
miRNA:   3'- gCCGgU-ACC--UCGCGUgGCUCGUgUUc -5'
31034 5' -57.9 NC_006560.1 + 3106 0.66 0.803434
Target:  5'- gCGGCCAgcgaGGccAGCGCGCgcgggucgaacaUGAGCGCGGc -3'
miRNA:   3'- -GCCGGUa---CC--UCGCGUG------------GCUCGUGUUc -5'
31034 5' -57.9 NC_006560.1 + 4251 0.67 0.756612
Target:  5'- cCGGUgAUgaaGGAGCugcuguuGCGCCGGGCGCccGAGg -3'
miRNA:   3'- -GCCGgUA---CCUCG-------CGUGGCUCGUG--UUC- -5'
31034 5' -57.9 NC_006560.1 + 4692 0.67 0.794531
Target:  5'- cCGGCCAcGGcGGCGCGCgCGcggcGGCGCu-- -3'
miRNA:   3'- -GCCGGUaCC-UCGCGUG-GC----UCGUGuuc -5'
31034 5' -57.9 NC_006560.1 + 5166 0.68 0.699011
Target:  5'- gGGCCGcgGGGGCGgGCCGcGGCgACGGc -3'
miRNA:   3'- gCCGGUa-CCUCGCgUGGC-UCG-UGUUc -5'
31034 5' -57.9 NC_006560.1 + 5460 0.73 0.434335
Target:  5'- -cGCCcgGGGGCGCcggggcuCCGAGCGCGGu -3'
miRNA:   3'- gcCGGuaCCUCGCGu------GGCUCGUGUUc -5'
31034 5' -57.9 NC_006560.1 + 5635 0.67 0.794531
Target:  5'- cCGGCCGgcgacgGGcGGCGCccgGCCGgcuccgccccggGGCGCGGGg -3'
miRNA:   3'- -GCCGGUa-----CC-UCGCG---UGGC------------UCGUGUUC- -5'
31034 5' -57.9 NC_006560.1 + 7117 0.68 0.738385
Target:  5'- -cGCCAUaaucgagcgcggGGAGCGCcgcacguCCGGGCACAu- -3'
miRNA:   3'- gcCGGUA------------CCUCGCGu------GGCUCGUGUuc -5'
31034 5' -57.9 NC_006560.1 + 9097 0.66 0.829195
Target:  5'- aCGGC---GGAGCGCGCgCGcGGCGCGc- -3'
miRNA:   3'- -GCCGguaCCUCGCGUG-GC-UCGUGUuc -5'
31034 5' -57.9 NC_006560.1 + 9557 0.66 0.820774
Target:  5'- gCGGCCAgccccaGGGcCGCGCCGAagacgccCACGAGg -3'
miRNA:   3'- -GCCGGUa-----CCUcGCGUGGCUc------GUGUUC- -5'
31034 5' -57.9 NC_006560.1 + 9618 0.67 0.794531
Target:  5'- gCGGCCccUGGGGcCGCGCCGaAGgGguGGg -3'
miRNA:   3'- -GCCGGu-ACCUC-GCGUGGC-UCgUguUC- -5'
31034 5' -57.9 NC_006560.1 + 9650 0.69 0.658751
Target:  5'- gCGGCCGgaggGGGGCgGUACCGcGGCAgGGa -3'
miRNA:   3'- -GCCGGUa---CCUCG-CGUGGC-UCGUgUUc -5'
31034 5' -57.9 NC_006560.1 + 10527 0.68 0.70896
Target:  5'- -cGCCAUcaaccGGGGgGCGCCGAcGCACuGGg -3'
miRNA:   3'- gcCGGUA-----CCUCgCGUGGCU-CGUGuUC- -5'
31034 5' -57.9 NC_006560.1 + 11145 0.78 0.215018
Target:  5'- gGGCCccGGggcGGCGCGgCGAGCGCGAGa -3'
miRNA:   3'- gCCGGuaCC---UCGCGUgGCUCGUGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.