miRNA display CGI


Results 1 - 20 of 348 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31035 5' -60.2 NC_006560.1 + 140290 0.66 0.746604
Target:  5'- cGGGGGUaucgUCcAGucccAGCGcCGGcCGCGCCGg -3'
miRNA:   3'- -UCCUCG----AGuUC----UCGCuGCC-GCGCGGC- -5'
31035 5' -60.2 NC_006560.1 + 125228 0.66 0.746604
Target:  5'- uGGuGGGCUUAAauAGCGGCGuCGCGUCGg -3'
miRNA:   3'- -UC-CUCGAGUUc-UCGCUGCcGCGCGGC- -5'
31035 5' -60.2 NC_006560.1 + 15782 0.66 0.746604
Target:  5'- cGGGGGCcggCAGGgcccGGCGcCGGCgGCGaCCGc -3'
miRNA:   3'- -UCCUCGa--GUUC----UCGCuGCCG-CGC-GGC- -5'
31035 5' -60.2 NC_006560.1 + 18665 0.66 0.746604
Target:  5'- gGGGGGCUCGu-GGCcccucccgGACGGacuCGCGCUGg -3'
miRNA:   3'- -UCCUCGAGUucUCG--------CUGCC---GCGCGGC- -5'
31035 5' -60.2 NC_006560.1 + 37508 0.66 0.746604
Target:  5'- cGGGGU--GGGGGUu-UGGCGCGCCGc -3'
miRNA:   3'- uCCUCGagUUCUCGcuGCCGCGCGGC- -5'
31035 5' -60.2 NC_006560.1 + 83452 0.66 0.746604
Target:  5'- cGGcGGCggCGAGAGCuGCugcacGCGCGCCGu -3'
miRNA:   3'- uCC-UCGa-GUUCUCGcUGc----CGCGCGGC- -5'
31035 5' -60.2 NC_006560.1 + 141480 0.66 0.746604
Target:  5'- gAGuAGCUCgAGGGGCGugGgGCcCGCUGg -3'
miRNA:   3'- -UCcUCGAG-UUCUCGCugC-CGcGCGGC- -5'
31035 5' -60.2 NC_006560.1 + 150202 0.66 0.746604
Target:  5'- -aGAGU--GAGGGUGGCGaGCGCGCgGa -3'
miRNA:   3'- ucCUCGagUUCUCGCUGC-CGCGCGgC- -5'
31035 5' -60.2 NC_006560.1 + 3935 0.66 0.746604
Target:  5'- cGGGGGCggcgccgcggUCGGcGGCGAgGGCG-GCCGc -3'
miRNA:   3'- -UCCUCG----------AGUUcUCGCUgCCGCgCGGC- -5'
31035 5' -60.2 NC_006560.1 + 27624 0.66 0.746604
Target:  5'- -cGAGCUC----GCGGCgGGCGCgGCCGg -3'
miRNA:   3'- ucCUCGAGuucuCGCUG-CCGCG-CGGC- -5'
31035 5' -60.2 NC_006560.1 + 111707 0.66 0.746604
Target:  5'- cGGAGcCUCGA---CGACGucGCGCGCCa -3'
miRNA:   3'- uCCUC-GAGUUcucGCUGC--CGCGCGGc -5'
31035 5' -60.2 NC_006560.1 + 118984 0.66 0.746604
Target:  5'- cGuGGCUCGGGGaggucGCG-CGGCGCcuGCCGg -3'
miRNA:   3'- uCcUCGAGUUCU-----CGCuGCCGCG--CGGC- -5'
31035 5' -60.2 NC_006560.1 + 75166 0.66 0.746604
Target:  5'- cGGGAgaaccccgagGC-CGAGGGCGAC--CGCGCCGc -3'
miRNA:   3'- -UCCU----------CGaGUUCUCGCUGccGCGCGGC- -5'
31035 5' -60.2 NC_006560.1 + 62959 0.66 0.746604
Target:  5'- cGGcGAGCUgcgcCGAG-GCGACGGUGgGCa- -3'
miRNA:   3'- -UC-CUCGA----GUUCuCGCUGCCGCgCGgc -5'
31035 5' -60.2 NC_006560.1 + 54990 0.66 0.746604
Target:  5'- cGGAGgcCUCGggcggaucgagGGGGCGG-GGCGCGCgGa -3'
miRNA:   3'- uCCUC--GAGU-----------UCUCGCUgCCGCGCGgC- -5'
31035 5' -60.2 NC_006560.1 + 34638 0.66 0.746604
Target:  5'- cGGAGgUCGcaccGGGGaCGcGCGGCG-GCCGg -3'
miRNA:   3'- uCCUCgAGU----UCUC-GC-UGCCGCgCGGC- -5'
31035 5' -60.2 NC_006560.1 + 95198 0.66 0.740932
Target:  5'- cGGcGAGCUCGAGAagaugcugcgggucaGCGuccACGGCGaggugcuGCCGg -3'
miRNA:   3'- -UC-CUCGAGUUCU---------------CGC---UGCCGCg------CGGC- -5'
31035 5' -60.2 NC_006560.1 + 94387 0.66 0.739983
Target:  5'- cAGGuccGGCUCGAcgacaacGAGCuGCGGCGCuaccugccccacgccGCCGg -3'
miRNA:   3'- -UCC---UCGAGUU-------CUCGcUGCCGCG---------------CGGC- -5'
31035 5' -60.2 NC_006560.1 + 122781 0.66 0.737132
Target:  5'- cGGGGC-CcGGAGCuuCGGCGgGuCCGg -3'
miRNA:   3'- uCCUCGaGuUCUCGcuGCCGCgC-GGC- -5'
31035 5' -60.2 NC_006560.1 + 122094 0.66 0.737132
Target:  5'- cGGGAGUUgGAG-GCG-CGGCuaaagucacGCGCCc -3'
miRNA:   3'- -UCCUCGAgUUCuCGCuGCCG---------CGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.