miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31036 5' -56.2 NC_006560.1 + 127718 0.66 0.922175
Target:  5'- gUCCGCg-CGCCGAUgggGUCGGggaagcCACGGc -3'
miRNA:   3'- gAGGCGaaGCGGCUG---UAGCU------GUGCCa -5'
31036 5' -56.2 NC_006560.1 + 126399 0.66 0.922175
Target:  5'- uCUCCGCcgCGCgCGGCG-CG-CAUGGa -3'
miRNA:   3'- -GAGGCGaaGCG-GCUGUaGCuGUGCCa -5'
31036 5' -56.2 NC_006560.1 + 130302 0.66 0.922175
Target:  5'- uCUCgGC--CGCCGGCGcgguggcggCGGCGCGGg -3'
miRNA:   3'- -GAGgCGaaGCGGCUGUa--------GCUGUGCCa -5'
31036 5' -56.2 NC_006560.1 + 77099 0.66 0.922175
Target:  5'- -gCCGCccgCGCCcACAggGGCGCGGg -3'
miRNA:   3'- gaGGCGaa-GCGGcUGUagCUGUGCCa -5'
31036 5' -56.2 NC_006560.1 + 89447 0.66 0.922175
Target:  5'- -gCCGCaUCGCCGACGccacCGAgCACGa- -3'
miRNA:   3'- gaGGCGaAGCGGCUGUa---GCU-GUGCca -5'
31036 5' -56.2 NC_006560.1 + 107297 0.66 0.922175
Target:  5'- cCUCCGCgcuggUCGUCGAC-UCGgaccACACGc- -3'
miRNA:   3'- -GAGGCGa----AGCGGCUGuAGC----UGUGCca -5'
31036 5' -56.2 NC_006560.1 + 126265 0.66 0.916579
Target:  5'- cCUCCGCgUCGCUGGCcaccucGUCGuAgAUGGg -3'
miRNA:   3'- -GAGGCGaAGCGGCUG------UAGC-UgUGCCa -5'
31036 5' -56.2 NC_006560.1 + 83637 0.66 0.916579
Target:  5'- -cCCGCgcCGCC-ACcgUGGCGCGGg -3'
miRNA:   3'- gaGGCGaaGCGGcUGuaGCUGUGCCa -5'
31036 5' -56.2 NC_006560.1 + 150138 0.66 0.916579
Target:  5'- cCUCaGCUUCcgGCgGGCGcgcgCGACACGGa -3'
miRNA:   3'- -GAGgCGAAG--CGgCUGUa---GCUGUGCCa -5'
31036 5' -56.2 NC_006560.1 + 75684 0.66 0.916579
Target:  5'- -cCCGC-UCGCCGcCGUCcaccgccugGACugGGg -3'
miRNA:   3'- gaGGCGaAGCGGCuGUAG---------CUGugCCa -5'
31036 5' -56.2 NC_006560.1 + 18797 0.66 0.91075
Target:  5'- -gCCGCgggaCGCCGucGCGUCGcgcccACGCGGg -3'
miRNA:   3'- gaGGCGaa--GCGGC--UGUAGC-----UGUGCCa -5'
31036 5' -56.2 NC_006560.1 + 52824 0.66 0.91075
Target:  5'- -gCCGCcccagCGCCGACA-CGGCgcuGCGGc -3'
miRNA:   3'- gaGGCGaa---GCGGCUGUaGCUG---UGCCa -5'
31036 5' -56.2 NC_006560.1 + 83124 0.66 0.91075
Target:  5'- -cCCGCUUCGCCcucaccgucaacGACAUCcAC-CGGc -3'
miRNA:   3'- gaGGCGAAGCGG------------CUGUAGcUGuGCCa -5'
31036 5' -56.2 NC_006560.1 + 69192 0.66 0.909556
Target:  5'- gUCCGUggucaucgacgCGCUGA--UCGACGCGGg -3'
miRNA:   3'- gAGGCGaa---------GCGGCUguAGCUGUGCCa -5'
31036 5' -56.2 NC_006560.1 + 131212 0.66 0.904688
Target:  5'- --gCGCUgCGCCGGCccgCGACGcCGGg -3'
miRNA:   3'- gagGCGAaGCGGCUGua-GCUGU-GCCa -5'
31036 5' -56.2 NC_006560.1 + 126436 0.66 0.904688
Target:  5'- -gCCGgaUCGCCGAg--CGcGCGCGGUg -3'
miRNA:   3'- gaGGCgaAGCGGCUguaGC-UGUGCCA- -5'
31036 5' -56.2 NC_006560.1 + 83706 0.66 0.902199
Target:  5'- gCUuuGCgcggUUCGCCGGCGccggggcccguccCGACGCGGa -3'
miRNA:   3'- -GAggCG----AAGCGGCUGUa------------GCUGUGCCa -5'
31036 5' -56.2 NC_006560.1 + 105035 0.66 0.898397
Target:  5'- gCUCCGCggCGCCG-CcgCGGgGgGGg -3'
miRNA:   3'- -GAGGCGaaGCGGCuGuaGCUgUgCCa -5'
31036 5' -56.2 NC_006560.1 + 63470 0.66 0.898397
Target:  5'- -cCCGCUcUGCUgGGCGUUGGCGgGGUg -3'
miRNA:   3'- gaGGCGAaGCGG-CUGUAGCUGUgCCA- -5'
31036 5' -56.2 NC_006560.1 + 678 0.66 0.898397
Target:  5'- -cCCGCggCGCgGGC-UCGuCGCGGg -3'
miRNA:   3'- gaGGCGaaGCGgCUGuAGCuGUGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.