miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31037 3' -53.7 NC_006560.1 + 114363 0.66 0.971727
Target:  5'- gCGCGUacgCgGGCGaCCGCGagGGCGACGc -3'
miRNA:   3'- gGUGUA---GgUCGC-GGUGCagUUGCUGU- -5'
31037 3' -53.7 NC_006560.1 + 85899 0.66 0.971727
Target:  5'- gCCACucuUCCGGCgGUCGCGcggccagcgCGGCGGCc -3'
miRNA:   3'- -GGUGu--AGGUCG-CGGUGCa--------GUUGCUGu -5'
31037 3' -53.7 NC_006560.1 + 92265 0.66 0.971727
Target:  5'- aCCAgAUCCuGCGCUACu---GCGACc -3'
miRNA:   3'- -GGUgUAGGuCGCGGUGcaguUGCUGu -5'
31037 3' -53.7 NC_006560.1 + 136956 0.66 0.971727
Target:  5'- uCCGC-UCCuucgaggccGUGCUGCG-CGACGACAg -3'
miRNA:   3'- -GGUGuAGGu--------CGCGGUGCaGUUGCUGU- -5'
31037 3' -53.7 NC_006560.1 + 149917 0.66 0.971727
Target:  5'- aCgGCggCCgGGCGCgGCGUCggUGGCc -3'
miRNA:   3'- -GgUGuaGG-UCGCGgUGCAGuuGCUGu -5'
31037 3' -53.7 NC_006560.1 + 15282 0.66 0.971727
Target:  5'- gUCGCGggagCCGGCGCgGCGgCggUGGCc -3'
miRNA:   3'- -GGUGUa---GGUCGCGgUGCaGuuGCUGu -5'
31037 3' -53.7 NC_006560.1 + 43007 0.66 0.971727
Target:  5'- cCCGCAgcacggccUCCcgcGGCGCCACGUUcuGCcGCAc -3'
miRNA:   3'- -GGUGU--------AGG---UCGCGGUGCAGu-UGcUGU- -5'
31037 3' -53.7 NC_006560.1 + 83711 0.66 0.971727
Target:  5'- gCGCGguucgCCGGCGCCGgggccCGUCc-CGACGc -3'
miRNA:   3'- gGUGUa----GGUCGCGGU-----GCAGuuGCUGU- -5'
31037 3' -53.7 NC_006560.1 + 100411 0.66 0.971727
Target:  5'- cCCuCcUCCAgGCGCCGgGUCGccagcgagaccgACGGCAg -3'
miRNA:   3'- -GGuGuAGGU-CGCGGUgCAGU------------UGCUGU- -5'
31037 3' -53.7 NC_006560.1 + 107857 0.66 0.970869
Target:  5'- uCCACggCCAGCaccagggaggucacGCC-CGUCAggcggGCGACc -3'
miRNA:   3'- -GGUGuaGGUCG--------------CGGuGCAGU-----UGCUGu -5'
31037 3' -53.7 NC_006560.1 + 74327 0.66 0.968795
Target:  5'- gCCGCcgCCGGCgGCCugGcUCccgagacGCGGCGc -3'
miRNA:   3'- -GGUGuaGGUCG-CGGugC-AGu------UGCUGU- -5'
31037 3' -53.7 NC_006560.1 + 53482 0.66 0.968795
Target:  5'- gCCGCGg-CGGCG-CGCGagGACGACGa -3'
miRNA:   3'- -GGUGUagGUCGCgGUGCagUUGCUGU- -5'
31037 3' -53.7 NC_006560.1 + 54626 0.66 0.968795
Target:  5'- aCCGCggCgAGCuGCUugG-CGACGGCGc -3'
miRNA:   3'- -GGUGuaGgUCG-CGGugCaGUUGCUGU- -5'
31037 3' -53.7 NC_006560.1 + 127122 0.66 0.968795
Target:  5'- cCCcCA-CCAGCGUCGCGU--GCGugAc -3'
miRNA:   3'- -GGuGUaGGUCGCGGUGCAguUGCugU- -5'
31037 3' -53.7 NC_006560.1 + 128200 0.66 0.968795
Target:  5'- gCCACGcCCggguucucggAGCGCCGCGgccuguuccucCAGCGGCu -3'
miRNA:   3'- -GGUGUaGG----------UCGCGGUGCa----------GUUGCUGu -5'
31037 3' -53.7 NC_006560.1 + 103017 0.66 0.968795
Target:  5'- cCCGCcUCC-GCGCC-CGgUCGACGcGCGg -3'
miRNA:   3'- -GGUGuAGGuCGCGGuGC-AGUUGC-UGU- -5'
31037 3' -53.7 NC_006560.1 + 102165 0.66 0.966935
Target:  5'- gUCGCGgaagUCGGCGCCGCGggCGgugagggggaagucgGCGGCGg -3'
miRNA:   3'- -GGUGUa---GGUCGCGGUGCa-GU---------------UGCUGU- -5'
31037 3' -53.7 NC_006560.1 + 84428 0.66 0.965652
Target:  5'- gCCGCGggCCGGCGCUcCGcCcACGGCc -3'
miRNA:   3'- -GGUGUa-GGUCGCGGuGCaGuUGCUGu -5'
31037 3' -53.7 NC_006560.1 + 60952 0.66 0.965652
Target:  5'- gCCACGugcUCCAcGaCGCCGCGgaggcCGugGACu -3'
miRNA:   3'- -GGUGU---AGGU-C-GCGGUGCa----GUugCUGu -5'
31037 3' -53.7 NC_006560.1 + 108163 0.66 0.965326
Target:  5'- aCCGCGUCCgccaggaAGgGCU-CGUCGAuCGGCGg -3'
miRNA:   3'- -GGUGUAGG-------UCgCGGuGCAGUU-GCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.