miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31037 5' -58.8 NC_006560.1 + 114169 0.66 0.796605
Target:  5'- cCGCAaCGCCGUCGUC----GCGGGCa -3'
miRNA:   3'- -GCGUaGCGGUAGCGGaccaCGCUCGa -5'
31037 5' -58.8 NC_006560.1 + 77088 0.66 0.795714
Target:  5'- gCGCGUacgccgcCGCCcgCGCCcacaggGGcGCGGGCg -3'
miRNA:   3'- -GCGUA-------GCGGuaGCGGa-----CCaCGCUCGa -5'
31037 5' -58.8 NC_006560.1 + 69878 0.66 0.787634
Target:  5'- cCGCucgGUCGCguUCGCCcugcgGGUGCuGGCc -3'
miRNA:   3'- -GCG---UAGCGguAGCGGa----CCACGcUCGa -5'
31037 5' -58.8 NC_006560.1 + 55830 0.66 0.787634
Target:  5'- gGCggCGCCGUCGCCcgGGUaguagucgGCG-GCc -3'
miRNA:   3'- gCGuaGCGGUAGCGGa-CCA--------CGCuCGa -5'
31037 5' -58.8 NC_006560.1 + 23733 0.66 0.787634
Target:  5'- gCGCcgaggcCGCCGUCGCCgccGUGCGcGCc -3'
miRNA:   3'- -GCGua----GCGGUAGCGGac-CACGCuCGa -5'
31037 5' -58.8 NC_006560.1 + 59373 0.66 0.778527
Target:  5'- gGaCGUCaGCCAUgGCUggUGGUGCGGGa- -3'
miRNA:   3'- gC-GUAG-CGGUAgCGG--ACCACGCUCga -5'
31037 5' -58.8 NC_006560.1 + 10075 0.66 0.778527
Target:  5'- aCGUAgggGUCGUCGUCgUGG-GCGAGCg -3'
miRNA:   3'- -GCGUag-CGGUAGCGG-ACCaCGCUCGa -5'
31037 5' -58.8 NC_006560.1 + 83979 0.66 0.778527
Target:  5'- gCGguUCGCCG-C-CCUGcUGCGGGCg -3'
miRNA:   3'- -GCguAGCGGUaGcGGACcACGCUCGa -5'
31037 5' -58.8 NC_006560.1 + 140020 0.66 0.778527
Target:  5'- aCGCGagGCCGUgGgCCUGGc-CGGGCUg -3'
miRNA:   3'- -GCGUagCGGUAgC-GGACCacGCUCGA- -5'
31037 5' -58.8 NC_006560.1 + 11775 0.66 0.778527
Target:  5'- gCGCGUCGaCCGgcgucUCGCCgccgGGgGgGGGCUc -3'
miRNA:   3'- -GCGUAGC-GGU-----AGCGGa---CCaCgCUCGA- -5'
31037 5' -58.8 NC_006560.1 + 22653 0.66 0.769293
Target:  5'- gGCGUCGCC---GCCgGGcgcaGCGAGCg -3'
miRNA:   3'- gCGUAGCGGuagCGGaCCa---CGCUCGa -5'
31037 5' -58.8 NC_006560.1 + 27596 0.66 0.769293
Target:  5'- gCGCGggugggCGCUcgCGCCUGcUGCccGAGCUc -3'
miRNA:   3'- -GCGUa-----GCGGuaGCGGACcACG--CUCGA- -5'
31037 5' -58.8 NC_006560.1 + 18798 0.66 0.769293
Target:  5'- cCGCGggaCGCCGUCGCgUcgcgcccacgcgGGUGCGucgGGCg -3'
miRNA:   3'- -GCGUa--GCGGUAGCGgA------------CCACGC---UCGa -5'
31037 5' -58.8 NC_006560.1 + 89448 0.66 0.759939
Target:  5'- cCGCAUCGCCGaCGCCac---CGAGCa -3'
miRNA:   3'- -GCGUAGCGGUaGCGGaccacGCUCGa -5'
31037 5' -58.8 NC_006560.1 + 131662 0.66 0.759939
Target:  5'- gGCGUCGCCggCGaggcCCUGGcggGCGGGg- -3'
miRNA:   3'- gCGUAGCGGuaGC----GGACCa--CGCUCga -5'
31037 5' -58.8 NC_006560.1 + 119083 0.66 0.759939
Target:  5'- aCGCGgcgGCCGUCcugucguuCCUGG-GCGAGCg -3'
miRNA:   3'- -GCGUag-CGGUAGc-------GGACCaCGCUCGa -5'
31037 5' -58.8 NC_006560.1 + 21741 0.66 0.759939
Target:  5'- gGCGcCGcCCGUCGCCggccgGGguauaugagGCGGGCg -3'
miRNA:   3'- gCGUaGC-GGUAGCGGa----CCa--------CGCUCGa -5'
31037 5' -58.8 NC_006560.1 + 76218 0.66 0.759939
Target:  5'- gGCGagGCCAaggaCGCgCUGGUGCGcGCc -3'
miRNA:   3'- gCGUagCGGUa---GCG-GACCACGCuCGa -5'
31037 5' -58.8 NC_006560.1 + 138116 0.67 0.740908
Target:  5'- cCGCGaCGUCGUCgGCCUGcGUGCugccggacgccGAGCa -3'
miRNA:   3'- -GCGUaGCGGUAG-CGGAC-CACG-----------CUCGa -5'
31037 5' -58.8 NC_006560.1 + 57557 0.67 0.729308
Target:  5'- uCGCGUaCGCCGcCGCCaGGgcgaaccaccgcGCGAGCg -3'
miRNA:   3'- -GCGUA-GCGGUaGCGGaCCa-----------CGCUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.