miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31037 5' -58.8 NC_006560.1 + 140163 0.67 0.721508
Target:  5'- uCGUAUUcgGCCAUCaGCCgGGcgGUGAGCg -3'
miRNA:   3'- -GCGUAG--CGGUAG-CGGaCCa-CGCUCGa -5'
31037 5' -58.8 NC_006560.1 + 117923 0.67 0.721508
Target:  5'- aCGCcgCcgacgGCCcgCGCCUGGcGCG-GCUg -3'
miRNA:   3'- -GCGuaG-----CGGuaGCGGACCaCGCuCGA- -5'
31037 5' -58.8 NC_006560.1 + 22688 0.67 0.711691
Target:  5'- gCGCGcCGCCGUgGCCgGGcGCGAcGCc -3'
miRNA:   3'- -GCGUaGCGGUAgCGGaCCaCGCU-CGa -5'
31037 5' -58.8 NC_006560.1 + 126464 0.67 0.711691
Target:  5'- gGCGUCGCgCA-CGuggcggaagaaCCUGGUGCGGuGCUc -3'
miRNA:   3'- gCGUAGCG-GUaGC-----------GGACCACGCU-CGA- -5'
31037 5' -58.8 NC_006560.1 + 95698 0.67 0.711691
Target:  5'- -uCAUCGCCAccacacucuUCGCCUccguguaccGGUGCGGGg- -3'
miRNA:   3'- gcGUAGCGGU---------AGCGGA---------CCACGCUCga -5'
31037 5' -58.8 NC_006560.1 + 4412 0.67 0.701808
Target:  5'- gGCGUCGCCcagcucgggCGCCcacacgGGcGCGGGCg -3'
miRNA:   3'- gCGUAGCGGua-------GCGGa-----CCaCGCUCGa -5'
31037 5' -58.8 NC_006560.1 + 44768 0.68 0.691868
Target:  5'- gGaCGUgGCCAUCGCCga--GCGGGCUc -3'
miRNA:   3'- gC-GUAgCGGUAGCGGaccaCGCUCGA- -5'
31037 5' -58.8 NC_006560.1 + 123909 0.68 0.691868
Target:  5'- cCGCAaCGCCGUCGCCccgcGCuGAGCg -3'
miRNA:   3'- -GCGUaGCGGUAGCGGaccaCG-CUCGa -5'
31037 5' -58.8 NC_006560.1 + 92635 0.68 0.681879
Target:  5'- cCGCAaguUCGUCcUCGCCUGcccGCGGGCc -3'
miRNA:   3'- -GCGU---AGCGGuAGCGGACca-CGCUCGa -5'
31037 5' -58.8 NC_006560.1 + 41654 0.68 0.67185
Target:  5'- gCGCAgcUCGCCcgCGUCcGGUgccgucGCGGGCg -3'
miRNA:   3'- -GCGU--AGCGGuaGCGGaCCA------CGCUCGa -5'
31037 5' -58.8 NC_006560.1 + 5296 0.68 0.641608
Target:  5'- gGCGUCGUCGUCgGCCgccGcGUGCGAcgGCg -3'
miRNA:   3'- gCGUAGCGGUAG-CGGa--C-CACGCU--CGa -5'
31037 5' -58.8 NC_006560.1 + 26264 0.68 0.641608
Target:  5'- gCGCGUCGCgGggcucgCGCCgccgGGgagccugGCGGGCg -3'
miRNA:   3'- -GCGUAGCGgUa-----GCGGa---CCa------CGCUCGa -5'
31037 5' -58.8 NC_006560.1 + 91897 0.68 0.641608
Target:  5'- cCGCGUgGUCuUCGCC-GGcGCGGGCg -3'
miRNA:   3'- -GCGUAgCGGuAGCGGaCCaCGCUCGa -5'
31037 5' -58.8 NC_006560.1 + 101766 0.69 0.631502
Target:  5'- cCGCGUCGCggggcaCGUCGCCgGGgGCG-GCg -3'
miRNA:   3'- -GCGUAGCG------GUAGCGGaCCaCGCuCGa -5'
31037 5' -58.8 NC_006560.1 + 5345 0.69 0.631502
Target:  5'- gGCGUCcucggcggGCCGUCGUCcGGguccgGCGAGCc -3'
miRNA:   3'- gCGUAG--------CGGUAGCGGaCCa----CGCUCGa -5'
31037 5' -58.8 NC_006560.1 + 3363 0.69 0.631502
Target:  5'- gGCGUCGgCGUCGgCgGGcggGCGGGCg -3'
miRNA:   3'- gCGUAGCgGUAGCgGaCCa--CGCUCGa -5'
31037 5' -58.8 NC_006560.1 + 71968 0.69 0.611299
Target:  5'- gGC-UCGCCGgccuUCGUCgcgaaGGUGCGGGCc -3'
miRNA:   3'- gCGuAGCGGU----AGCGGa----CCACGCUCGa -5'
31037 5' -58.8 NC_006560.1 + 24914 0.7 0.571131
Target:  5'- aCGCGcCGCCGccgCGCCUGGgccGCG-GCg -3'
miRNA:   3'- -GCGUaGCGGUa--GCGGACCa--CGCuCGa -5'
31037 5' -58.8 NC_006560.1 + 40289 0.7 0.571131
Target:  5'- cCGCAgaccccCGCCAgccccccgCGCUUGG-GCGGGCg -3'
miRNA:   3'- -GCGUa-----GCGGUa-------GCGGACCaCGCUCGa -5'
31037 5' -58.8 NC_006560.1 + 94182 0.7 0.561177
Target:  5'- gCGCggCGCCGUCGCCgcgcUGGagcGCGuGCg -3'
miRNA:   3'- -GCGuaGCGGUAGCGG----ACCa--CGCuCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.