miRNA display CGI


Results 1 - 20 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31038 3' -60.2 NC_006560.1 + 18790 0.66 0.77549
Target:  5'- uCCUGCgGCCGCGGGacgccgucgcgUCGCgcccacgcgggugcgUCgGGCGGc -3'
miRNA:   3'- -GGAUG-CGGCGCCU-----------GGCGa--------------AGgCCGUC- -5'
31038 3' -60.2 NC_006560.1 + 95654 0.66 0.774591
Target:  5'- --aACGCCcacccaGCGGGCCGC--CUGGCGa -3'
miRNA:   3'- ggaUGCGG------CGCCUGGCGaaGGCCGUc -5'
31038 3' -60.2 NC_006560.1 + 514 0.66 0.774591
Target:  5'- gCCacggGCGCCgGgGGGCgGCggCCGGCc- -3'
miRNA:   3'- -GGa---UGCGG-CgCCUGgCGaaGGCCGuc -5'
31038 3' -60.2 NC_006560.1 + 3655 0.66 0.774591
Target:  5'- gCCUcgGCGCCGcCGGGgaCGCggaggucgCCGcGCAGg -3'
miRNA:   3'- -GGA--UGCGGC-GCCUg-GCGaa------GGC-CGUC- -5'
31038 3' -60.2 NC_006560.1 + 32043 0.66 0.774591
Target:  5'- aCUAcCGCCGUGG-UCGCguggUCUcugggGGCAGg -3'
miRNA:   3'- gGAU-GCGGCGCCuGGCGa---AGG-----CCGUC- -5'
31038 3' -60.2 NC_006560.1 + 53462 0.66 0.774591
Target:  5'- uCCUgucgGCGCCGCccgaGGCCGCgg-CGGCGc -3'
miRNA:   3'- -GGA----UGCGGCGc---CUGGCGaagGCCGUc -5'
31038 3' -60.2 NC_006560.1 + 63925 0.66 0.774591
Target:  5'- --cACGcCCGUGGGCCGCaggcUCUGGUc- -3'
miRNA:   3'- ggaUGC-GGCGCCUGGCGa---AGGCCGuc -5'
31038 3' -60.2 NC_006560.1 + 69429 0.66 0.774591
Target:  5'- --gGCGCaCGCGcggcucugcgaGGCCGCggggCUGGCGGg -3'
miRNA:   3'- ggaUGCG-GCGC-----------CUGGCGaa--GGCCGUC- -5'
31038 3' -60.2 NC_006560.1 + 91525 0.66 0.774591
Target:  5'- aCC-ACGCCaugucgcucgcGCuGGAcCCGCacgCCGGCGGg -3'
miRNA:   3'- -GGaUGCGG-----------CG-CCU-GGCGaa-GGCCGUC- -5'
31038 3' -60.2 NC_006560.1 + 434 0.66 0.774591
Target:  5'- cCCgGCcuCCGCGGccuCCGCggccuccCCGGCGGg -3'
miRNA:   3'- -GGaUGc-GGCGCCu--GGCGaa-----GGCCGUC- -5'
31038 3' -60.2 NC_006560.1 + 108141 0.66 0.774591
Target:  5'- --cGCGUCGCGGAagaucucguugaCCGCgUCCGcCAGg -3'
miRNA:   3'- ggaUGCGGCGCCU------------GGCGaAGGCcGUC- -5'
31038 3' -60.2 NC_006560.1 + 101322 0.66 0.774591
Target:  5'- --cGCGCCGCGcGGgCGCga-CGGCGc -3'
miRNA:   3'- ggaUGCGGCGC-CUgGCGaagGCCGUc -5'
31038 3' -60.2 NC_006560.1 + 84692 0.66 0.774591
Target:  5'- gCCUGCGgCGCGGGCgacggGCgccUCGGCGc -3'
miRNA:   3'- -GGAUGCgGCGCCUGg----CGaa-GGCCGUc -5'
31038 3' -60.2 NC_006560.1 + 23783 0.66 0.774591
Target:  5'- gCCgccGCGCCGCugcuGGcCCGCagCCcgcGGCAGg -3'
miRNA:   3'- -GGa--UGCGGCG----CCuGGCGaaGG---CCGUC- -5'
31038 3' -60.2 NC_006560.1 + 113452 0.66 0.774591
Target:  5'- uCCUguGCGCCGCGGcgcCCGacgCgGGCGc -3'
miRNA:   3'- -GGA--UGCGGCGCCu--GGCgaaGgCCGUc -5'
31038 3' -60.2 NC_006560.1 + 4626 0.66 0.773691
Target:  5'- gCCU-CGUCGgcguccaggggcaCGGGCCGCggCCGcGCGGc -3'
miRNA:   3'- -GGAuGCGGC-------------GCCUGGCGaaGGC-CGUC- -5'
31038 3' -60.2 NC_006560.1 + 13006 0.66 0.77279
Target:  5'- aCCgucACGCCccgcucaaagacCGGGCCGCgg-CGGCAGg -3'
miRNA:   3'- -GGa--UGCGGc-----------GCCUGGCGaagGCCGUC- -5'
31038 3' -60.2 NC_006560.1 + 3784 0.66 0.76554
Target:  5'- aCCgcgGCGCgCGCGG-CCGCcagcccgggCaCGGCGGc -3'
miRNA:   3'- -GGa--UGCG-GCGCCuGGCGaa-------G-GCCGUC- -5'
31038 3' -60.2 NC_006560.1 + 135352 0.66 0.76554
Target:  5'- gCCg--GCCGCGGACCGgagUCGcGCGGc -3'
miRNA:   3'- -GGaugCGGCGCCUGGCgaaGGC-CGUC- -5'
31038 3' -60.2 NC_006560.1 + 23352 0.66 0.76554
Target:  5'- cCCgggACGCCGCc-GCCGCccCCGGCc- -3'
miRNA:   3'- -GGa--UGCGGCGccUGGCGaaGGCCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.