miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31038 5' -56.4 NC_006560.1 + 137241 0.66 0.91462
Target:  5'- cGCUGgGGGCGCGGg----CGGCGGGc -3'
miRNA:   3'- aUGAUgCUCGCGCUggagaGCUGCCC- -5'
31038 5' -56.4 NC_006560.1 + 99931 0.66 0.91462
Target:  5'- cGCU-CGGGCGCGGCg----GACGGGa -3'
miRNA:   3'- aUGAuGCUCGCGCUGgagagCUGCCC- -5'
31038 5' -56.4 NC_006560.1 + 99473 0.66 0.91462
Target:  5'- gGCgccggACGGGCGCG-CCgCcCGGCGGa -3'
miRNA:   3'- aUGa----UGCUCGCGCuGGaGaGCUGCCc -5'
31038 5' -56.4 NC_006560.1 + 99208 0.66 0.91462
Target:  5'- cGCgACGGaaGCGACCg--CGGCGGGc -3'
miRNA:   3'- aUGaUGCUcgCGCUGGagaGCUGCCC- -5'
31038 5' -56.4 NC_006560.1 + 76582 0.66 0.91462
Target:  5'- gGCUgcACGGGCGCcugGACgCgCUCGGCGaGGc -3'
miRNA:   3'- aUGA--UGCUCGCG---CUG-GaGAGCUGC-CC- -5'
31038 5' -56.4 NC_006560.1 + 3954 0.66 0.908728
Target:  5'- gGCgGCGAGgGCGGCCgccaGGCGGc -3'
miRNA:   3'- aUGaUGCUCgCGCUGGagagCUGCCc -5'
31038 5' -56.4 NC_006560.1 + 74611 0.66 0.908728
Target:  5'- -cCUcCGGGCG-GACCUCcCGgGCGGGu -3'
miRNA:   3'- auGAuGCUCGCgCUGGAGaGC-UGCCC- -5'
31038 5' -56.4 NC_006560.1 + 127151 0.66 0.908728
Target:  5'- --aUGCGGGuCGCGGCgUCgagcUCGGCGGc -3'
miRNA:   3'- augAUGCUC-GCGCUGgAG----AGCUGCCc -5'
31038 5' -56.4 NC_006560.1 + 127589 0.66 0.908728
Target:  5'- aUGCUguACGGGgGCGACCUggcCGAgUGGGu -3'
miRNA:   3'- -AUGA--UGCUCgCGCUGGAga-GCU-GCCC- -5'
31038 5' -56.4 NC_006560.1 + 64943 0.66 0.908126
Target:  5'- gACggGgGGGCucgccgccgGCGGCCUCgucccccUCGGCGGGg -3'
miRNA:   3'- aUGa-UgCUCG---------CGCUGGAG-------AGCUGCCC- -5'
31038 5' -56.4 NC_006560.1 + 39597 0.66 0.906915
Target:  5'- ---gGCGGGCGCGccggcccgcggagcGCCg--CGGCGGGc -3'
miRNA:   3'- augaUGCUCGCGC--------------UGGagaGCUGCCC- -5'
31038 5' -56.4 NC_006560.1 + 11330 0.66 0.902606
Target:  5'- aUGCU-CGGG-GCGACCgg-CGAgGGGg -3'
miRNA:   3'- -AUGAuGCUCgCGCUGGagaGCUgCCC- -5'
31038 5' -56.4 NC_006560.1 + 95178 0.66 0.902606
Target:  5'- cGCUGCGugcgcgagcAGCGCGGCgagCUCGagaagaugcuGCGGGu -3'
miRNA:   3'- aUGAUGC---------UCGCGCUGga-GAGC----------UGCCC- -5'
31038 5' -56.4 NC_006560.1 + 31545 0.66 0.896256
Target:  5'- ---gACGGGCGCcaucggGGCCUacguggucCUCGugGGGc -3'
miRNA:   3'- augaUGCUCGCG------CUGGA--------GAGCugCCC- -5'
31038 5' -56.4 NC_006560.1 + 94321 0.66 0.896256
Target:  5'- aACca-GGGCGCGACCgUCgccCGGCGGc -3'
miRNA:   3'- aUGaugCUCGCGCUGG-AGa--GCUGCCc -5'
31038 5' -56.4 NC_006560.1 + 5476 0.66 0.896256
Target:  5'- gGCUcCGAGCGCGGUCg--CGGCGaGGg -3'
miRNA:   3'- aUGAuGCUCGCGCUGGagaGCUGC-CC- -5'
31038 5' -56.4 NC_006560.1 + 126031 0.66 0.896256
Target:  5'- aACUcacACGAG-GCGACCcCgUgGGCGGGg -3'
miRNA:   3'- aUGA---UGCUCgCGCUGGaG-AgCUGCCC- -5'
31038 5' -56.4 NC_006560.1 + 107767 0.66 0.892338
Target:  5'- gGCgAgGAGCGCGGCCaguacgcggcgaccCUCGuGCGGGu -3'
miRNA:   3'- aUGaUgCUCGCGCUGGa-------------GAGC-UGCCC- -5'
31038 5' -56.4 NC_006560.1 + 137188 0.66 0.889682
Target:  5'- cGCggaGGGCGCGGCCcCgccggCGGcCGGGg -3'
miRNA:   3'- aUGaugCUCGCGCUGGaGa----GCU-GCCC- -5'
31038 5' -56.4 NC_006560.1 + 52272 0.66 0.889682
Target:  5'- --aUGCGGGCGCGGCgUCgacgcgcaucuUUGGCGGc -3'
miRNA:   3'- augAUGCUCGCGCUGgAG-----------AGCUGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.