miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31039 5' -56.4 NC_006560.1 + 12880 0.66 0.871494
Target:  5'- cUCGGGCgggaGCagGGUGCUCGUGG-UCGg -3'
miRNA:   3'- aAGCCCG----UGg-CCAUGAGCGUCaAGUa -5'
31039 5' -56.4 NC_006560.1 + 67029 0.66 0.863164
Target:  5'- aUCGGGCcgucgcggcgagcGCCGGUggGC-CGCAGgaCGUg -3'
miRNA:   3'- aAGCCCG-------------UGGCCA--UGaGCGUCaaGUA- -5'
31039 5' -56.4 NC_006560.1 + 11503 0.67 0.83497
Target:  5'- cUCGGGCGCCGGggaggcGCUCGUcgcccgacccccgccGGgggUCGc -3'
miRNA:   3'- aAGCCCGUGGCCa-----UGAGCG---------------UCa--AGUa -5'
31039 5' -56.4 NC_006560.1 + 80524 0.67 0.787029
Target:  5'- -gCGGaGCACCGGUcgcagcgcGCUgGCGGUccUCAUc -3'
miRNA:   3'- aaGCC-CGUGGCCA--------UGAgCGUCA--AGUA- -5'
31039 5' -56.4 NC_006560.1 + 147954 0.68 0.738879
Target:  5'- -gCGGGC-CCGG-GCUCGCAGagcUCGg -3'
miRNA:   3'- aaGCCCGuGGCCaUGAGCGUCa--AGUa -5'
31039 5' -56.4 NC_006560.1 + 18958 0.68 0.728922
Target:  5'- -gCGGGCGCCGG-GCgUCGCGGgccgCGa -3'
miRNA:   3'- aaGCCCGUGGCCaUG-AGCGUCaa--GUa -5'
31039 5' -56.4 NC_006560.1 + 106007 0.7 0.636566
Target:  5'- -cCGGGCAagCGGUAC-CGCAcGUUCGUc -3'
miRNA:   3'- aaGCCCGUg-GCCAUGaGCGU-CAAGUA- -5'
31039 5' -56.4 NC_006560.1 + 51795 0.71 0.574408
Target:  5'- -gCGGGCGCCGGgaccgugGCccCGCGGUUCc- -3'
miRNA:   3'- aaGCCCGUGGCCa------UGa-GCGUCAAGua -5'
31039 5' -56.4 NC_006560.1 + 31122 0.75 0.376161
Target:  5'- cUCGGGCGCCGGgggcgccuccgGCUCGCGGg---- -3'
miRNA:   3'- aAGCCCGUGGCCa----------UGAGCGUCaagua -5'
31039 5' -56.4 NC_006560.1 + 43284 0.75 0.376161
Target:  5'- cUUCaGGGCGCCGGU-CUCGCGGacgUCGg -3'
miRNA:   3'- -AAG-CCCGUGGCCAuGAGCGUCa--AGUa -5'
31039 5' -56.4 NC_006560.1 + 96484 1.04 0.004698
Target:  5'- gUUCGGGCACCGGUACUCGCAGUUCAUg -3'
miRNA:   3'- -AAGCCCGUGGCCAUGAGCGUCAAGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.