miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3104 5' -60.2 NC_001493.1 + 32721 0.66 0.667431
Target:  5'- --cGGCCCGaGACCCcUUCUUcgucucccgGGCCAg -3'
miRNA:   3'- uuaCCGGGCgUUGGGuAGGAG---------CCGGU- -5'
3104 5' -60.2 NC_001493.1 + 133050 0.66 0.657268
Target:  5'- --gGGCCCGguACCCGUCCcccUUGauCCAg -3'
miRNA:   3'- uuaCCGGGCguUGGGUAGG---AGCc-GGU- -5'
3104 5' -60.2 NC_001493.1 + 17496 0.66 0.657268
Target:  5'- --gGGCCCGguACCCGUCCcccUUGauCCAg -3'
miRNA:   3'- uuaCCGGGCguUGGGUAGG---AGCc-GGU- -5'
3104 5' -60.2 NC_001493.1 + 129024 0.66 0.626691
Target:  5'- --cGGCCCGCAGuucCCCGagUCUCccaggGGCCGg -3'
miRNA:   3'- uuaCCGGGCGUU---GGGUa-GGAG-----CCGGU- -5'
3104 5' -60.2 NC_001493.1 + 62451 0.66 0.626691
Target:  5'- cGUGGCCgUGCccguGCCCGUgCCcgUGGCCGg -3'
miRNA:   3'- uUACCGG-GCGu---UGGGUA-GGa-GCCGGU- -5'
3104 5' -60.2 NC_001493.1 + 75474 0.67 0.616497
Target:  5'- --cGGUguugaGCGAgCCAUCCUUGGCCu -3'
miRNA:   3'- uuaCCGgg---CGUUgGGUAGGAGCCGGu -5'
3104 5' -60.2 NC_001493.1 + 76967 0.67 0.616497
Target:  5'- --aGGCCCugaAGCCCGUCacgUgGGCCAa -3'
miRNA:   3'- uuaCCGGGcg-UUGGGUAGg--AgCCGGU- -5'
3104 5' -60.2 NC_001493.1 + 5371 0.67 0.59615
Target:  5'- --cGGUCCGCGGCUCGcUCCUCccGCCc -3'
miRNA:   3'- uuaCCGGGCGUUGGGU-AGGAGc-CGGu -5'
3104 5' -60.2 NC_001493.1 + 120925 0.67 0.59615
Target:  5'- --cGGUCCGCGGCUCGcUCCUCccGCCc -3'
miRNA:   3'- uuaCCGGGCGUUGGGU-AGGAGc-CGGu -5'
3104 5' -60.2 NC_001493.1 + 18378 0.67 0.56183
Target:  5'- --gGGCCCGauggucaguuugaAACCCccGUCCaCGGCCAc -3'
miRNA:   3'- uuaCCGGGCg------------UUGGG--UAGGaGCCGGU- -5'
3104 5' -60.2 NC_001493.1 + 133932 0.67 0.56183
Target:  5'- --gGGCCCGauggucaguuugaAACCCccGUCCaCGGCCAc -3'
miRNA:   3'- uuaCCGGGCg------------UUGGG--UAGGaGCCGGU- -5'
3104 5' -60.2 NC_001493.1 + 15069 0.68 0.545858
Target:  5'- --gGGCCCGC-ACCCGcaccgcucccUCCggGGCCc -3'
miRNA:   3'- uuaCCGGGCGuUGGGU----------AGGagCCGGu -5'
3104 5' -60.2 NC_001493.1 + 130623 0.68 0.545858
Target:  5'- --gGGCCCGC-ACCCGcaccgcucccUCCggGGCCc -3'
miRNA:   3'- uuaCCGGGCGuUGGGU----------AGGagCCGGu -5'
3104 5' -60.2 NC_001493.1 + 29548 0.68 0.53595
Target:  5'- gGGUGGUCCGCGACa-GUCCgagcgcccgCGGUCAc -3'
miRNA:   3'- -UUACCGGGCGUUGggUAGGa--------GCCGGU- -5'
3104 5' -60.2 NC_001493.1 + 32764 0.68 0.506627
Target:  5'- uAUGGCCC-CGgaccguaaacGCCCGUCC-CGGUCGc -3'
miRNA:   3'- uUACCGGGcGU----------UGGGUAGGaGCCGGU- -5'
3104 5' -60.2 NC_001493.1 + 61343 0.69 0.497004
Target:  5'- -uUGGCCCggagucccGCGACCCAgUCCaucccccgcUUGGCCGg -3'
miRNA:   3'- uuACCGGG--------CGUUGGGU-AGG---------AGCCGGU- -5'
3104 5' -60.2 NC_001493.1 + 31504 0.69 0.47801
Target:  5'- ---cGCCCGC-GCCCAcCuCUCGGCCc -3'
miRNA:   3'- uuacCGGGCGuUGGGUaG-GAGCCGGu -5'
3104 5' -60.2 NC_001493.1 + 13573 0.69 0.450213
Target:  5'- --aGGCCCGagacCGACCCGUCCcgaGGCUc -3'
miRNA:   3'- uuaCCGGGC----GUUGGGUAGGag-CCGGu -5'
3104 5' -60.2 NC_001493.1 + 129127 0.69 0.450213
Target:  5'- --aGGCCCGagacCGACCCGUCCcgaGGCUc -3'
miRNA:   3'- uuaCCGGGC----GUUGGGUAGGag-CCGGu -5'
3104 5' -60.2 NC_001493.1 + 57543 0.7 0.420693
Target:  5'- --gGGCCCggacggugugaaccGCAcgauCCCAUUUUCGGCCAg -3'
miRNA:   3'- uuaCCGGG--------------CGUu---GGGUAGGAGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.