miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31040 3' -53.6 NC_006560.1 + 89727 0.66 0.974859
Target:  5'- uCGUCgGgCUCACCguggagaGCGGCUUCGAg -3'
miRNA:   3'- cGCAGaUgGAGUGGa------UGCUGAGGCUg -5'
31040 3' -53.6 NC_006560.1 + 85653 0.66 0.974859
Target:  5'- cGCGUCUggGCCacgaUCACgUACGGgaUCCGGu -3'
miRNA:   3'- -CGCAGA--UGG----AGUGgAUGCUg-AGGCUg -5'
31040 3' -53.6 NC_006560.1 + 114813 0.66 0.974859
Target:  5'- ----gUACCUCAUCUACGACgcaucUCCGcuGCg -3'
miRNA:   3'- cgcagAUGGAGUGGAUGCUG-----AGGC--UG- -5'
31040 3' -53.6 NC_006560.1 + 93653 0.66 0.974859
Target:  5'- gGgGUC-GCCgCGgCUuCGGCUCCGGCg -3'
miRNA:   3'- -CgCAGaUGGaGUgGAuGCUGAGGCUG- -5'
31040 3' -53.6 NC_006560.1 + 102429 0.66 0.974859
Target:  5'- gGCGUCcGCCUCcucgGCCgccGCGGCcgCCGuCu -3'
miRNA:   3'- -CGCAGaUGGAG----UGGa--UGCUGa-GGCuG- -5'
31040 3' -53.6 NC_006560.1 + 5296 0.66 0.972164
Target:  5'- gGCGUCgucgucgGCCgcCGCgUGCGACggCGGCg -3'
miRNA:   3'- -CGCAGa------UGGa-GUGgAUGCUGagGCUG- -5'
31040 3' -53.6 NC_006560.1 + 116217 0.66 0.972164
Target:  5'- uGCGUUUGCCggagUAgCUGCGgGCgUCCGAg -3'
miRNA:   3'- -CGCAGAUGGa---GUgGAUGC-UG-AGGCUg -5'
31040 3' -53.6 NC_006560.1 + 82640 0.66 0.969266
Target:  5'- gGCGUUcgACCgcgcguaugUCGCCUuCGACcCCGGCc -3'
miRNA:   3'- -CGCAGa-UGG---------AGUGGAuGCUGaGGCUG- -5'
31040 3' -53.6 NC_006560.1 + 24880 0.66 0.966159
Target:  5'- cGCGUCgagGCC--GCCUGCGcgcgccucuACcCCGACg -3'
miRNA:   3'- -CGCAGa--UGGagUGGAUGC---------UGaGGCUG- -5'
31040 3' -53.6 NC_006560.1 + 24957 0.66 0.966159
Target:  5'- cGCGUgcGCacgCGCCUGgGGC-CCGACa -3'
miRNA:   3'- -CGCAgaUGga-GUGGAUgCUGaGGCUG- -5'
31040 3' -53.6 NC_006560.1 + 99253 0.66 0.966159
Target:  5'- gGCGUUgGCCggagUCGCgUACGGCUgcgggugggCCGGCg -3'
miRNA:   3'- -CGCAGaUGG----AGUGgAUGCUGA---------GGCUG- -5'
31040 3' -53.6 NC_006560.1 + 140655 0.66 0.962837
Target:  5'- cGUGUCgcucGCCgCGCCgcUGCGACUCgcaaCGGCg -3'
miRNA:   3'- -CGCAGa---UGGaGUGG--AUGCUGAG----GCUG- -5'
31040 3' -53.6 NC_006560.1 + 18404 0.66 0.962837
Target:  5'- -gGUCaggACgCgCGCCUGCGGCUgCGACc -3'
miRNA:   3'- cgCAGa--UG-GaGUGGAUGCUGAgGCUG- -5'
31040 3' -53.6 NC_006560.1 + 117776 0.67 0.955527
Target:  5'- uCGUCUcGCUccccgUCGCCUGCGACgccCgCGGCg -3'
miRNA:   3'- cGCAGA-UGG-----AGUGGAUGCUGa--G-GCUG- -5'
31040 3' -53.6 NC_006560.1 + 22516 0.67 0.950701
Target:  5'- cCGUCgacgcgaACCUCGCCgccggcgccguCGACUCgGACc -3'
miRNA:   3'- cGCAGa------UGGAGUGGau---------GCUGAGgCUG- -5'
31040 3' -53.6 NC_006560.1 + 126643 0.67 0.947297
Target:  5'- aGCGcUCcGCCgccaCGCCgACGACgCCGGCg -3'
miRNA:   3'- -CGC-AGaUGGa---GUGGaUGCUGaGGCUG- -5'
31040 3' -53.6 NC_006560.1 + 9694 0.67 0.942828
Target:  5'- cGCGUUccggUACCUCGCC-GCGGugCUGACg -3'
miRNA:   3'- -CGCAG----AUGGAGUGGaUGCUgaGGCUG- -5'
31040 3' -53.6 NC_006560.1 + 112456 0.67 0.942828
Target:  5'- cGCGUCgucaacggcaACCUCccCCUGCcccuGugUCCGACc -3'
miRNA:   3'- -CGCAGa---------UGGAGu-GGAUG----CugAGGCUG- -5'
31040 3' -53.6 NC_006560.1 + 84677 0.67 0.942828
Target:  5'- gGgGgcugCUGCCcCGCCUGCGGCgCgGGCg -3'
miRNA:   3'- -CgCa---GAUGGaGUGGAUGCUGaGgCUG- -5'
31040 3' -53.6 NC_006560.1 + 61653 0.68 0.933171
Target:  5'- gGCuGUCgGCCggCGCCUGCGACcggaugaagCCGAUc -3'
miRNA:   3'- -CG-CAGaUGGa-GUGGAUGCUGa--------GGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.