miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31040 5' -59.1 NC_006560.1 + 42837 0.65 0.8024
Target:  5'- cGGCC-UUGggCGGGgcgGCGGGCCagccgugGGGCg -3'
miRNA:   3'- aCCGGuAGCa-GCUCa--CGCUCGG-------CCUG- -5'
31040 5' -59.1 NC_006560.1 + 147126 0.66 0.794473
Target:  5'- gGGCCG-CGgcgCGAGgcgcGCGcGCCGcGGCg -3'
miRNA:   3'- aCCGGUaGCa--GCUCa---CGCuCGGC-CUG- -5'
31040 5' -59.1 NC_006560.1 + 27624 0.66 0.794473
Target:  5'- cGaGCUcgCGgCGGGcGCG-GCCGGGCg -3'
miRNA:   3'- aC-CGGuaGCaGCUCaCGCuCGGCCUG- -5'
31040 5' -59.1 NC_006560.1 + 3368 0.66 0.794473
Target:  5'- cGG-CGUCGgcgggCGGGcggGCGGGCgCGGGCc -3'
miRNA:   3'- aCCgGUAGCa----GCUCa--CGCUCG-GCCUG- -5'
31040 5' -59.1 NC_006560.1 + 14796 0.66 0.794473
Target:  5'- gGGCUc-CGUCGGGgggcucGgGGGCCGGAg -3'
miRNA:   3'- aCCGGuaGCAGCUCa-----CgCUCGGCCUg -5'
31040 5' -59.1 NC_006560.1 + 21018 0.66 0.785532
Target:  5'- gGGCCcgCccCGAaggGCGGGCCGGGg -3'
miRNA:   3'- aCCGGuaGcaGCUca-CGCUCGGCCUg -5'
31040 5' -59.1 NC_006560.1 + 23067 0.66 0.785532
Target:  5'- cGGCCGg---CGAcGUG-GAGCUGGACc -3'
miRNA:   3'- aCCGGUagcaGCU-CACgCUCGGCCUG- -5'
31040 5' -59.1 NC_006560.1 + 34982 0.66 0.785532
Target:  5'- gGGCCccccgggCGccUCGGGgccGCGGGCCGGcCg -3'
miRNA:   3'- aCCGGua-----GC--AGCUCa--CGCUCGGCCuG- -5'
31040 5' -59.1 NC_006560.1 + 65900 0.66 0.785532
Target:  5'- aGGCCG-CGUaggCGcacGUGCGGGCCguGGGCc -3'
miRNA:   3'- aCCGGUaGCA---GCu--CACGCUCGG--CCUG- -5'
31040 5' -59.1 NC_006560.1 + 99153 0.66 0.785532
Target:  5'- cGGCC-UCGcCGGGgGCGGccgucCCGGGCg -3'
miRNA:   3'- aCCGGuAGCaGCUCaCGCUc----GGCCUG- -5'
31040 5' -59.1 NC_006560.1 + 112299 0.66 0.785532
Target:  5'- gGGCCAgaugaCGccCGAGcaguucGCGcGGCCGGACa -3'
miRNA:   3'- aCCGGUa----GCa-GCUCa-----CGC-UCGGCCUG- -5'
31040 5' -59.1 NC_006560.1 + 95942 0.66 0.785532
Target:  5'- cUGGCCcccaagcUCG-CGGccgGCGGGCCGGAg -3'
miRNA:   3'- -ACCGGu------AGCaGCUca-CGCUCGGCCUg -5'
31040 5' -59.1 NC_006560.1 + 101350 0.66 0.785532
Target:  5'- -cGCCugggCGUCGAGgcacagggcgGCGAGgCCGGGa -3'
miRNA:   3'- acCGGua--GCAGCUCa---------CGCUC-GGCCUg -5'
31040 5' -59.1 NC_006560.1 + 32838 0.66 0.784631
Target:  5'- gGGCCA-CG-CGGGcgGCGGGCagcccccCGGGCa -3'
miRNA:   3'- aCCGGUaGCaGCUCa-CGCUCG-------GCCUG- -5'
31040 5' -59.1 NC_006560.1 + 18951 0.66 0.776459
Target:  5'- gGGCCcggcgggCGcCGGGcgucGCGGGCCGcGACg -3'
miRNA:   3'- aCCGGua-----GCaGCUCa---CGCUCGGC-CUG- -5'
31040 5' -59.1 NC_006560.1 + 26523 0.66 0.776459
Target:  5'- gGGCCGUgGgCGGGcGCGcGCgGGGCc -3'
miRNA:   3'- aCCGGUAgCaGCUCaCGCuCGgCCUG- -5'
31040 5' -59.1 NC_006560.1 + 34470 0.66 0.776459
Target:  5'- gGGCguUCGcgggCGuGUGCgggGAGCCGGGg -3'
miRNA:   3'- aCCGguAGCa---GCuCACG---CUCGGCCUg -5'
31040 5' -59.1 NC_006560.1 + 94732 0.66 0.776459
Target:  5'- gUGGCgGcCGUCGAGcugGCGcuguucggccGCCGGGCc -3'
miRNA:   3'- -ACCGgUaGCAGCUCa--CGCu---------CGGCCUG- -5'
31040 5' -59.1 NC_006560.1 + 101776 0.66 0.776459
Target:  5'- gGGCaCGUCGcCGGGggcgGCG-GCaGGACg -3'
miRNA:   3'- aCCG-GUAGCaGCUCa---CGCuCGgCCUG- -5'
31040 5' -59.1 NC_006560.1 + 58102 0.66 0.776459
Target:  5'- cGGCCG-CGcccgacUCGGGUGCGGccGCCGaGAa -3'
miRNA:   3'- aCCGGUaGC------AGCUCACGCU--CGGC-CUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.