miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31040 5' -59.1 NC_006560.1 + 120 0.66 0.757948
Target:  5'- cGGCCggCG-CGGGUuuGGGCgGGGCc -3'
miRNA:   3'- aCCGGuaGCaGCUCAcgCUCGgCCUG- -5'
31040 5' -59.1 NC_006560.1 + 3368 0.66 0.794473
Target:  5'- cGG-CGUCGgcgggCGGGcggGCGGGCgCGGGCc -3'
miRNA:   3'- aCCgGUAGCa----GCUCa--CGCUCG-GCCUG- -5'
31040 5' -59.1 NC_006560.1 + 3412 0.67 0.719712
Target:  5'- cGcGCCggCGggCGGGcgGCGGGCgCGGGCg -3'
miRNA:   3'- aC-CGGuaGCa-GCUCa-CGCUCG-GCCUG- -5'
31040 5' -59.1 NC_006560.1 + 5160 0.71 0.50237
Target:  5'- gGGCCGgggcCG-CGGGgGCGGGCCGcGGCg -3'
miRNA:   3'- aCCGGUa---GCaGCUCaCGCUCGGC-CUG- -5'
31040 5' -59.1 NC_006560.1 + 5357 0.73 0.370135
Target:  5'- gGGCCGUCGUcCGGGUccgGCGAGCCcgcgccgccgagcGGAg -3'
miRNA:   3'- aCCGGUAGCA-GCUCA---CGCUCGG-------------CCUg -5'
31040 5' -59.1 NC_006560.1 + 9628 0.67 0.700126
Target:  5'- gGGCCG-CGccgaaggggUGGGUGCG-GCCGGAg -3'
miRNA:   3'- aCCGGUaGCa--------GCUCACGCuCGGCCUg -5'
31040 5' -59.1 NC_006560.1 + 10081 0.71 0.50237
Target:  5'- gGGUCGUCGUCGuGgGCGAGCgGcACg -3'
miRNA:   3'- aCCGGUAGCAGCuCaCGCUCGgCcUG- -5'
31040 5' -59.1 NC_006560.1 + 10361 0.66 0.767261
Target:  5'- gGGCCGcCGUgGAGuUGgGGGCgCGcGACa -3'
miRNA:   3'- aCCGGUaGCAgCUC-ACgCUCG-GC-CUG- -5'
31040 5' -59.1 NC_006560.1 + 12817 0.69 0.600209
Target:  5'- gGGCCgcucguccucGUCGUCGGGgaccagcuCGGGCCGGGu -3'
miRNA:   3'- aCCGG----------UAGCAGCUCac------GCUCGGCCUg -5'
31040 5' -59.1 NC_006560.1 + 14796 0.66 0.794473
Target:  5'- gGGCUc-CGUCGGGgggcucGgGGGCCGGAg -3'
miRNA:   3'- aCCGGuaGCAGCUCa-----CgCUCGGCCUg -5'
31040 5' -59.1 NC_006560.1 + 15244 0.69 0.600209
Target:  5'- cGGCCGgugCgGUCGGGgagGCGGacGCCGGGg -3'
miRNA:   3'- aCCGGUa--G-CAGCUCa--CGCU--CGGCCUg -5'
31040 5' -59.1 NC_006560.1 + 15352 0.67 0.700126
Target:  5'- cGGCCGggGUCGcGGUGa-GGCCGGGa -3'
miRNA:   3'- aCCGGUagCAGC-UCACgcUCGGCCUg -5'
31040 5' -59.1 NC_006560.1 + 18951 0.66 0.776459
Target:  5'- gGGCCcggcgggCGcCGGGcgucGCGGGCCGcGACg -3'
miRNA:   3'- aCCGGua-----GCaGCUCa---CGCUCGGC-CUG- -5'
31040 5' -59.1 NC_006560.1 + 19624 0.66 0.767261
Target:  5'- gUGGCguccgaGUCGUCGGGcGUGucgucgucGCCGGGCc -3'
miRNA:   3'- -ACCGg-----UAGCAGCUCaCGCu-------CGGCCUG- -5'
31040 5' -59.1 NC_006560.1 + 21018 0.66 0.785532
Target:  5'- gGGCCcgCccCGAaggGCGGGCCGGGg -3'
miRNA:   3'- aCCGGuaGcaGCUca-CGCUCGGCCUg -5'
31040 5' -59.1 NC_006560.1 + 22636 0.7 0.56046
Target:  5'- gGGCCGcCGcCGAGacggGCGucgccGCCGGGCg -3'
miRNA:   3'- aCCGGUaGCaGCUCa---CGCu----CGGCCUG- -5'
31040 5' -59.1 NC_006560.1 + 23067 0.66 0.785532
Target:  5'- cGGCCGg---CGAcGUG-GAGCUGGACc -3'
miRNA:   3'- aCCGGUagcaGCU-CACgCUCGGCCUG- -5'
31040 5' -59.1 NC_006560.1 + 23739 0.67 0.700126
Target:  5'- aGGCCGcCGUCGccgccGUGCGcGCCguGGGCc -3'
miRNA:   3'- aCCGGUaGCAGCu----CACGCuCGG--CCUG- -5'
31040 5' -59.1 NC_006560.1 + 26523 0.66 0.776459
Target:  5'- gGGCCGUgGgCGGGcGCGcGCgGGGCc -3'
miRNA:   3'- aCCGGUAgCaGCUCaCGCuCGgCCUG- -5'
31040 5' -59.1 NC_006560.1 + 27142 0.72 0.429391
Target:  5'- gGGCCcgCacCGAGccGCGGGCCGGGCc -3'
miRNA:   3'- aCCGGuaGcaGCUCa-CGCUCGGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.