miRNA display CGI


Results 1 - 20 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31041 3' -61.1 NC_006560.1 + 130076 0.66 0.711819
Target:  5'- gCGGCGCCGcgcGGgGGcGCCaUgGGCGAGg -3'
miRNA:   3'- -GCCGUGGC---UCaCC-CGGcAgUCGCUCa -5'
31041 3' -61.1 NC_006560.1 + 78113 0.66 0.711819
Target:  5'- gGGCGCUG-GU-GGCgGUCAGCGuGc -3'
miRNA:   3'- gCCGUGGCuCAcCCGgCAGUCGCuCa -5'
31041 3' -61.1 NC_006560.1 + 15346 0.66 0.711819
Target:  5'- cCGGCGCgGccgGGGUCG-CGGUGAGg -3'
miRNA:   3'- -GCCGUGgCucaCCCGGCaGUCGCUCa -5'
31041 3' -61.1 NC_006560.1 + 133952 0.66 0.711819
Target:  5'- uCGGC-CCGGGggucgucggGGGCCG-CGGCGc-- -3'
miRNA:   3'- -GCCGuGGCUCa--------CCCGGCaGUCGCuca -5'
31041 3' -61.1 NC_006560.1 + 108396 0.66 0.706031
Target:  5'- gCGGCGCgCGcGGUccuccucgcgcgucaGGuaGCCGUCGGCGGGa -3'
miRNA:   3'- -GCCGUG-GC-UCA---------------CC--CGGCAGUCGCUCa -5'
31041 3' -61.1 NC_006560.1 + 102175 0.66 0.702161
Target:  5'- uCGGCGCCGcGGgcggugaggGGGaaGUCGGCGgcGGUg -3'
miRNA:   3'- -GCCGUGGC-UCa--------CCCggCAGUCGC--UCA- -5'
31041 3' -61.1 NC_006560.1 + 133553 0.66 0.702161
Target:  5'- gCGGCGCgCGGcGUGGcGgaCGUCGGCGAc- -3'
miRNA:   3'- -GCCGUG-GCU-CACC-Cg-GCAGUCGCUca -5'
31041 3' -61.1 NC_006560.1 + 147113 0.66 0.702161
Target:  5'- gGGCGCgCGAcGcGGGCCG-CGgcGCGAGg -3'
miRNA:   3'- gCCGUG-GCU-CaCCCGGCaGU--CGCUCa -5'
31041 3' -61.1 NC_006560.1 + 148413 0.66 0.702161
Target:  5'- gGGCGcuCCGGGcGGGCCG---GCGAGg -3'
miRNA:   3'- gCCGU--GGCUCaCCCGGCaguCGCUCa -5'
31041 3' -61.1 NC_006560.1 + 12848 0.66 0.692448
Target:  5'- uCGG-GCCGGGUGccguuGGCCGUCuccgucaccucgGGCGGGa -3'
miRNA:   3'- -GCCgUGGCUCAC-----CCGGCAG------------UCGCUCa -5'
31041 3' -61.1 NC_006560.1 + 126682 0.66 0.692448
Target:  5'- uGGCGCCGAcGUGGGgCCccagCAGCa--- -3'
miRNA:   3'- gCCGUGGCU-CACCC-GGca--GUCGcuca -5'
31041 3' -61.1 NC_006560.1 + 94598 0.66 0.692448
Target:  5'- -cGC-CCGGGcUGuauGCCGUCAGCGAGc -3'
miRNA:   3'- gcCGuGGCUC-ACc--CGGCAGUCGCUCa -5'
31041 3' -61.1 NC_006560.1 + 20522 0.66 0.691474
Target:  5'- cCGGCGCC---UGGaGCCGUucagaacCGGCGAGg -3'
miRNA:   3'- -GCCGUGGcucACC-CGGCA-------GUCGCUCa -5'
31041 3' -61.1 NC_006560.1 + 56037 0.66 0.691474
Target:  5'- aGGCGCUGcGUGGGgaaggucCCGUCgaccgaguacAGCGGGg -3'
miRNA:   3'- gCCGUGGCuCACCC-------GGCAG----------UCGCUCa -5'
31041 3' -61.1 NC_006560.1 + 83435 0.66 0.682688
Target:  5'- -uGCACCGAGggucGGCgCGgcggCGGCGAGa -3'
miRNA:   3'- gcCGUGGCUCac--CCG-GCa---GUCGCUCa -5'
31041 3' -61.1 NC_006560.1 + 62395 0.66 0.682688
Target:  5'- cCGGUGCuCGAG-GGGgUGUCcaucGCGAGUg -3'
miRNA:   3'- -GCCGUG-GCUCaCCCgGCAGu---CGCUCA- -5'
31041 3' -61.1 NC_006560.1 + 23730 0.66 0.679752
Target:  5'- gCGGCGCCGAGgccGCCGUCGccgccgugcgcgccGUGGGc -3'
miRNA:   3'- -GCCGUGGCUCaccCGGCAGU--------------CGCUCa -5'
31041 3' -61.1 NC_006560.1 + 32155 0.66 0.672888
Target:  5'- gCGGgGCCGGGcguccccGGcGCCGagGGCGGGUc -3'
miRNA:   3'- -GCCgUGGCUCa------CC-CGGCagUCGCUCA- -5'
31041 3' -61.1 NC_006560.1 + 20974 0.66 0.672888
Target:  5'- gCGGCGCCGcc--GGCUuuauGUCGGCGGGg -3'
miRNA:   3'- -GCCGUGGCucacCCGG----CAGUCGCUCa -5'
31041 3' -61.1 NC_006560.1 + 11136 0.66 0.672888
Target:  5'- gGGCGUCGAGggccccgGGGCgGcgCGGCGAGc -3'
miRNA:   3'- gCCGUGGCUCa------CCCGgCa-GUCGCUCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.