miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31041 3' -61.1 NC_006560.1 + 32155 0.66 0.672888
Target:  5'- gCGGgGCCGGGcguccccGGcGCCGagGGCGGGUc -3'
miRNA:   3'- -GCCgUGGCUCa------CC-CGGCagUCGCUCA- -5'
31041 3' -61.1 NC_006560.1 + 98431 0.66 0.672888
Target:  5'- aCGGCgcGCCGcuGGcGGGCgG-CGGCGAGg -3'
miRNA:   3'- -GCCG--UGGC--UCaCCCGgCaGUCGCUCa -5'
31041 3' -61.1 NC_006560.1 + 65034 0.66 0.663058
Target:  5'- aCGGC-CCgGAGcgGGGCCGggcGCGGGg -3'
miRNA:   3'- -GCCGuGG-CUCa-CCCGGCaguCGCUCa -5'
31041 3' -61.1 NC_006560.1 + 146966 0.66 0.663058
Target:  5'- gGGgGCCGGGccUGGGCgGgUgGGCGGGg -3'
miRNA:   3'- gCCgUGGCUC--ACCCGgC-AgUCGCUCa -5'
31041 3' -61.1 NC_006560.1 + 43420 0.66 0.663058
Target:  5'- gCGGCGCCG-G-GGG-CGUCGGCGc-- -3'
miRNA:   3'- -GCCGUGGCuCaCCCgGCAGUCGCuca -5'
31041 3' -61.1 NC_006560.1 + 63323 0.66 0.663058
Target:  5'- gCGGCACUGGGgcgugggcUGGGCCGUguGguCGAu- -3'
miRNA:   3'- -GCCGUGGCUC--------ACCCGGCAguC--GCUca -5'
31041 3' -61.1 NC_006560.1 + 41010 0.66 0.661089
Target:  5'- gGGCGCCGAGUcGuugcucgcgccgacgGGCCGcaccgcguagaugcaUCGGCGGGc -3'
miRNA:   3'- gCCGUGGCUCA-C---------------CCGGC---------------AGUCGCUCa -5'
31041 3' -61.1 NC_006560.1 + 143713 0.67 0.643336
Target:  5'- aGGCGa-GAGcGGGCgCGUCGGgGAGa -3'
miRNA:   3'- gCCGUggCUCaCCCG-GCAGUCgCUCa -5'
31041 3' -61.1 NC_006560.1 + 3083 0.67 0.643336
Target:  5'- cCGGC-UCGGGcGGGCCGcagcgcgcggcCAGCGAGg -3'
miRNA:   3'- -GCCGuGGCUCaCCCGGCa----------GUCGCUCa -5'
31041 3' -61.1 NC_006560.1 + 3291 0.67 0.643336
Target:  5'- gGGCccGCCGGGcGGGCgGgCGGUGAGc -3'
miRNA:   3'- gCCG--UGGCUCaCCCGgCaGUCGCUCa -5'
31041 3' -61.1 NC_006560.1 + 3940 0.67 0.643336
Target:  5'- gCGGCGCCGc---GGUCGgCGGCGAGg -3'
miRNA:   3'- -GCCGUGGCucacCCGGCaGUCGCUCa -5'
31041 3' -61.1 NC_006560.1 + 116238 0.67 0.643336
Target:  5'- gGGCGuCCGAGUucggggcgaGGGUC-UCGGUGAGg -3'
miRNA:   3'- gCCGU-GGCUCA---------CCCGGcAGUCGCUCa -5'
31041 3' -61.1 NC_006560.1 + 519 0.67 0.633459
Target:  5'- gGGCGCCGGG-GGGCgG-CGGCcGGc -3'
miRNA:   3'- gCCGUGGCUCaCCCGgCaGUCGcUCa -5'
31041 3' -61.1 NC_006560.1 + 33809 0.67 0.633459
Target:  5'- gGGCGCggaCGGG-GGGCggggGUCGGCGGGg -3'
miRNA:   3'- gCCGUG---GCUCaCCCGg---CAGUCGCUCa -5'
31041 3' -61.1 NC_006560.1 + 35291 0.67 0.633459
Target:  5'- gGGC-CCGGGguccgGGGgCG-CGGCGGGg -3'
miRNA:   3'- gCCGuGGCUCa----CCCgGCaGUCGCUCa -5'
31041 3' -61.1 NC_006560.1 + 47866 0.67 0.633459
Target:  5'- gCGGCggGCCGGGggucgGGGUCGg-GGUGGGUg -3'
miRNA:   3'- -GCCG--UGGCUCa----CCCGGCagUCGCUCA- -5'
31041 3' -61.1 NC_006560.1 + 55459 0.67 0.633459
Target:  5'- gGGCGcCCGGGgcaGGGcCCGcCGGCGAc- -3'
miRNA:   3'- gCCGU-GGCUCa--CCC-GGCaGUCGCUca -5'
31041 3' -61.1 NC_006560.1 + 20190 0.67 0.623581
Target:  5'- gGGCgACCGGcccgGGGCuCGUCGGcCGAGc -3'
miRNA:   3'- gCCG-UGGCUca--CCCG-GCAGUC-GCUCa -5'
31041 3' -61.1 NC_006560.1 + 36192 0.67 0.623581
Target:  5'- gGGC-UCGGGgcucgGGGCCGgggucCAGCGGGc -3'
miRNA:   3'- gCCGuGGCUCa----CCCGGCa----GUCGCUCa -5'
31041 3' -61.1 NC_006560.1 + 14274 0.67 0.613709
Target:  5'- uGGCGCCG-GcGGcGUCGcCGGCGAGc -3'
miRNA:   3'- gCCGUGGCuCaCC-CGGCaGUCGCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.