miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31041 5' -50.2 NC_006560.1 + 125039 0.66 0.99502
Target:  5'- -gGCUgGUggcGCGGCGgucgCCGGCGg -3'
miRNA:   3'- aaUGAgCAaacUGCCGUaaa-GGCCGU- -5'
31041 5' -50.2 NC_006560.1 + 118868 0.66 0.99502
Target:  5'- -gGCgcgCGUgcaGACGGCGUgccUCCGGg- -3'
miRNA:   3'- aaUGa--GCAaa-CUGCCGUAa--AGGCCgu -5'
31041 5' -50.2 NC_006560.1 + 130666 0.66 0.994195
Target:  5'- gUGCgCGUc-GGCGGCGUcgCUGGCGg -3'
miRNA:   3'- aAUGaGCAaaCUGCCGUAaaGGCCGU- -5'
31041 5' -50.2 NC_006560.1 + 25443 0.66 0.994195
Target:  5'- -gACUgGgacccgGACGGCGag-CCGGCGg -3'
miRNA:   3'- aaUGAgCaaa---CUGCCGUaaaGGCCGU- -5'
31041 5' -50.2 NC_006560.1 + 65490 0.66 0.994017
Target:  5'- -gACUCGgcguugcgcgGGCGGUAacccagaacUUUCCGGCc -3'
miRNA:   3'- aaUGAGCaaa-------CUGCCGU---------AAAGGCCGu -5'
31041 5' -50.2 NC_006560.1 + 5311 0.66 0.993361
Target:  5'- -cGCcgCGUgcGACGGCGgcggccccuccgggUCCGGCGu -3'
miRNA:   3'- aaUGa-GCAaaCUGCCGUaa------------AGGCCGU- -5'
31041 5' -50.2 NC_006560.1 + 106864 0.66 0.993263
Target:  5'- -cGCUCGUUcgUGAUGGaCAcg-CUGGCGc -3'
miRNA:   3'- aaUGAGCAA--ACUGCC-GUaaaGGCCGU- -5'
31041 5' -50.2 NC_006560.1 + 14264 0.66 0.993263
Target:  5'- -gAUgucgCGUUggcgccGGCGGCGUcgCCGGCGa -3'
miRNA:   3'- aaUGa---GCAAa-----CUGCCGUAaaGGCCGU- -5'
31041 5' -50.2 NC_006560.1 + 142464 0.66 0.992214
Target:  5'- -cGCagGUgcGGCGGCGgccgCCGGCGu -3'
miRNA:   3'- aaUGagCAaaCUGCCGUaaa-GGCCGU- -5'
31041 5' -50.2 NC_006560.1 + 127169 0.66 0.991041
Target:  5'- -aGCUCG----GCGGCGUccugCCGGCGg -3'
miRNA:   3'- aaUGAGCaaacUGCCGUAaa--GGCCGU- -5'
31041 5' -50.2 NC_006560.1 + 125147 0.67 0.988581
Target:  5'- -cGCUCGUgagcgaucacgcggUGugGGCGgacgcgcgggCCGGCGg -3'
miRNA:   3'- aaUGAGCAa-------------ACugCCGUaaa-------GGCCGU- -5'
31041 5' -50.2 NC_006560.1 + 76360 0.67 0.988279
Target:  5'- -cGCUccugCGggUGGCGGCGaucCCGGCGa -3'
miRNA:   3'- aaUGA----GCaaACUGCCGUaaaGGCCGU- -5'
31041 5' -50.2 NC_006560.1 + 19677 0.67 0.98667
Target:  5'- ---gUCGUcgcUGGCGGCGUcgCUGGCGu -3'
miRNA:   3'- aaugAGCAa--ACUGCCGUAaaGGCCGU- -5'
31041 5' -50.2 NC_006560.1 + 120403 0.67 0.982951
Target:  5'- ---aUCGagggcGACGGCAgccUCCGGCAg -3'
miRNA:   3'- aaugAGCaaa--CUGCCGUaa-AGGCCGU- -5'
31041 5' -50.2 NC_006560.1 + 118323 0.68 0.980821
Target:  5'- -gGC-CGccgUGGCGGCGg--CCGGCGg -3'
miRNA:   3'- aaUGaGCaa-ACUGCCGUaaaGGCCGU- -5'
31041 5' -50.2 NC_006560.1 + 2383 0.68 0.975973
Target:  5'- gUACUCGcgcGGCGGCAgcggCaCGGCGg -3'
miRNA:   3'- aAUGAGCaaaCUGCCGUaaa-G-GCCGU- -5'
31041 5' -50.2 NC_006560.1 + 107249 0.69 0.956137
Target:  5'- -gGCUCGUgggGGCGGUGUUUaugCGGUAc -3'
miRNA:   3'- aaUGAGCAaa-CUGCCGUAAAg--GCCGU- -5'
31041 5' -50.2 NC_006560.1 + 70786 0.69 0.951987
Target:  5'- -cGCUCGUc--GCGGCGccggCCGGCAg -3'
miRNA:   3'- aaUGAGCAaacUGCCGUaaa-GGCCGU- -5'
31041 5' -50.2 NC_006560.1 + 20941 0.7 0.947581
Target:  5'- -gGCggCGgc-GACGGCGUUUgCGGCGg -3'
miRNA:   3'- aaUGa-GCaaaCUGCCGUAAAgGCCGU- -5'
31041 5' -50.2 NC_006560.1 + 15863 0.7 0.942915
Target:  5'- gUAgUCGUacgcGGCGGCGUgggggCCGGCGa -3'
miRNA:   3'- aAUgAGCAaa--CUGCCGUAaa---GGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.